View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_66 (Length: 250)
Name: NF8984_low_66
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_66 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 5280520 - 5280277
Alignment:
| Q |
1 |
tttgcaagtacttaaaacaaaaacaagattaccgagactaataactcttggtaactctcctgttgtgtgcaggccttgtgggactgtctctttcttatgc |
100 |
Q |
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| T |
5280520 |
tttgcaagtacttaaaacagaaacaagattaccgagactaataactcttggtaactctcctgttgtgtgcaggccttgtgggactgtctctttcttatgc |
5280421 |
T |
|
| Q |
101 |
tttttccttgacaggagcccaagtattttggactcgatggtttaacaacttgtcaaactatattatctccgttgaaagaatcaagcaattcattcacata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280420 |
tttttccttgacaggagcccaagtattttggactcgatggtttaacaacttgtcaaactatattatctccgttgaaagaatcaagcaattcattcacata |
5280321 |
T |
|
| Q |
201 |
ccagctgagcctcccgccattgtggataataaccgacctccata |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5280320 |
ccagctgagcctcccgccattgtggataataaccgacctccata |
5280277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 38 - 243
Target Start/End: Original strand, 5309022 - 5309227
Alignment:
| Q |
38 |
ctaataactcttggtaactctcctgttgtgtgcaggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcga |
137 |
Q |
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| T |
5309022 |
ctaataacttttggcaactctccttttttgtgcaggccttgtgggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggactcga |
5309121 |
T |
|
| Q |
138 |
tggtttaacaacttgtcaaactatattatctccgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccgac |
237 |
Q |
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| T |
5309122 |
tggttttccaacttatcaaactatattatctctgtcgaaagaatcaaccaattcattcacataccagctaagcctccctccattgtggataataatcgac |
5309221 |
T |
|
| Q |
238 |
ctccat |
243 |
Q |
| |
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|||||| |
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| T |
5309222 |
ctccat |
5309227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 5288210 - 5288005
Alignment:
| Q |
38 |
ctaataactcttggtaactctcctgttgtgtgcaggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcga |
137 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||| | || |
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| T |
5288210 |
ctaataactcttggcaactcttctgttgtgtgcaggccttgtggggctgtctctttcttatgcttttactttgacaggagcccaaatattttggagtaga |
5288111 |
T |
|
| Q |
138 |
tggtttaacaacttgtcaaactatattatctccgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccgac |
237 |
Q |
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| T |
5288110 |
tggttttccaacttatcaaaccatattatctccgttgaaagaatcaaccaattcattcacataccagctgaaccgcctgccattgtggataataaccgac |
5288011 |
T |
|
| Q |
238 |
ctccat |
243 |
Q |
| |
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| |||| |
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| T |
5288010 |
caccat |
5288005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 40 - 243
Target Start/End: Complemental strand, 14947443 - 14947237
Alignment:
| Q |
40 |
aataactcttggtaactctcctgttgtgtg---caggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcg |
136 |
Q |
| |
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|||||||||||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |
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| T |
14947443 |
aataactcttggcaactctcctgttctgtgttgcaggccttgttggactgtctctttcttatgcttttaccttgacaggagcccaaatattttggactag |
14947344 |
T |
|
| Q |
137 |
atggtttaacaacttgtcaaactatattatctccgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccga |
236 |
Q |
| |
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||||||| || || |||||| |||||||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||| |||||||| |||||||| |
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| T |
14947343 |
atggttttcaaatttatcaaaccatattatctctgttgaaagaatcaaacaattcattaacataccagctgagcctcctgccgttgtggatcataaccga |
14947244 |
T |
|
| Q |
237 |
cctccat |
243 |
Q |
| |
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||||||| |
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| T |
14947243 |
cctccat |
14947237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 15127599 - 15127791
Alignment:
| Q |
43 |
aactcttggtaactctcctgttgtgtgcaggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcgatggtt |
142 |
Q |
| |
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|||| |||| || ||||||||| || ||||||| |||||| ||||||||||||||||| || |||||| ||||||||| ||||||||||| ||||||| |
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| T |
15127599 |
aactgttggaaattctcctgttctgcgcaggccgcgtgggattgtctctttcttatgctcttaccttgaatggagcccaaatattttggactagatggtt |
15127698 |
T |
|
| Q |
143 |
taacaacttgtcaaactatattatctccgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccg |
235 |
Q |
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| T |
15127699 |
ttccaacttatcaaattatatcatctctgttgaaagaatcaagcaattcattcacataccagctgagcctcctgccattgtggataataaccg |
15127791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 70 - 226
Target Start/End: Original strand, 5315763 - 5315919
Alignment:
| Q |
70 |
caggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcgatggtttaacaacttgtcaaactatattatctc |
169 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||| |||||| ||||| | |||||||||||||||||||| |||||| || ||||| |||||||| |
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| T |
5315763 |
caggacttgtgggactgtctctttattatgctttaattttgacatcagccccaatattttggactcgatggttttccaacttatcgaactacattatctc |
5315862 |
T |
|
| Q |
170 |
cgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtgga |
226 |
Q |
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|||||||||||||| || ||||||||| | ||| ||||||||| ||||||||||| |
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| T |
5315863 |
tgttgaaagaatcaatcagttcattcacgttccatttgagcctcctgccattgtgga |
5315919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 64 - 243
Target Start/End: Complemental strand, 31524659 - 31524480
Alignment:
| Q |
64 |
tgtgtgcaggccttgtgggactgtctctttcttatgctttttccttgacaggagcccaagtattttggactcgatggtttaacaacttgtcaaactatat |
163 |
Q |
| |
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|||||||||| |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||||||| || ||| |||||| | || |
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| T |
31524659 |
tgtgtgcaggacttgtgggactgtctctttcgtatgcttttaatttgacaggagcccagatattttggactagatggttttccaccttatcaaacaacat |
31524560 |
T |
|
| Q |
164 |
tatctccgttgaaagaatcaagcaattcattcacataccagctgagcctcccgccattgtggataataaccgacctccat |
243 |
Q |
| |
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||||| ||||||||||||||||| ||||| |||| ||||| || ||||| |||||| |||| |||||||||| |||| |
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| T |
31524559 |
aatctcggttgaaagaatcaagcagttcatcgacattccagccgaacctcctgccattatggaggataaccgaccgccat |
31524480 |
T |
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