View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8984_low_7 (Length: 694)
Name: NF8984_low_7
Description: NF8984
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8984_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Complemental strand, 13471856 - 13471407
Alignment:
| Q |
19 |
gaaatttcatataaatgcgtttnnnnnnntcaatttattcaaaataattttttgtcaccacttaatcaaatacatgttacatatctatctatgttgttgg |
118 |
Q |
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| T |
13471856 |
gaaatttcatataaatgcgtttaaaaaaatcaatttattcaaaataattttttgtcaccacttaatcaaatacatgttacatatctatctatgttgttgg |
13471757 |
T |
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| Q |
119 |
caggggaatggaatttttaattcattttattcattgtttttatcataatagtgaggaatatgtattaagttgtcctctcatctgttttttctgcac--at |
216 |
Q |
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| T |
13471756 |
caggggaatggaatttttaattcattttattcattgtttttatcataatagtgaggaatatgtattaagttgtcctctcttctgttttttctgcacatat |
13471657 |
T |
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| Q |
217 |
atgtacatatacaaagctaattaaaatacaaacaaaagc--aaagtaaaatagaagcaaacaataaagtttttactattgatggattcgtccttcattta |
314 |
Q |
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| T |
13471656 |
atgtacatatacaaagctaattaaaatacaaacaaaagcaaaaagtaaaatagaagcaaacaataaagtttttactattgatggattcgtccttcattta |
13471557 |
T |
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| Q |
315 |
tttgatcaatgtaaataaatgttaacgacaaaatgcagaagcaaagtttacttatcctacgtcaagtattaaggttcgtcaaatgaacaatcactttcac |
414 |
Q |
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| T |
13471556 |
tttgatcaatgtaaagaaatgttaacgacaaaatgcagaagcaaactttacttatcctacgtcaagtattaaggttcgtcaaatgaacaatcactttcac |
13471457 |
T |
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| Q |
415 |
ttctgatatg-aacatagggttgactacttgactcaatccaaatgtcatg |
463 |
Q |
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| T |
13471456 |
ttctgatatgaaacatagggttgactacttgactcaatccaaatgtcatg |
13471407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 489 - 683
Target Start/End: Complemental strand, 13471380 - 13471185
Alignment:
| Q |
489 |
actaaattttgtcctttctatagtttctctctt-gtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactggtgatgaa |
587 |
Q |
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| T |
13471380 |
actaaattttgtcctttctatagtttctctctttgtagatagctacataccataatatgcctgaatcagaaatctgtcaactgatgatactggtgatgaa |
13471281 |
T |
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| Q |
588 |
gccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccctctctgctc |
683 |
Q |
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| T |
13471280 |
gccgtttttgatacataatttcatataaataataatcttccaaaggatatggtggtgaaaatcgataagcatgcatgcatgctaccatctctgctc |
13471185 |
T |
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