View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_high_17 (Length: 354)
Name: NF8985_high_17
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 51 - 340
Target Start/End: Complemental strand, 18317473 - 18317184
Alignment:
| Q |
51 |
attgaatcagatgcttagaagaaggagctgaagaattctttctgaaaccagttcaacaatcagatgtgaacaagctgaaaccacatttgttgaagacaaa |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18317473 |
attgaatcagatgcttagaagaaggagctgaagaattctttctgaaaccagttcaacaatcagatgtgaacaagctgaaaccacatttgttgaagacaaa |
18317374 |
T |
|
| Q |
151 |
agttaagaatgaagatgacctaatcaacaacaaaagaaggatacataacaatgcaattccattgaaaaactaggcaaaaaatgtaacctataaaagtggt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18317373 |
agttaagaatgaagatgacctaatcaacaacaaaagaaggatacataacaatgcaattccattgaaaaactaggcaaaaaatgtaacctataaaagtggt |
18317274 |
T |
|
| Q |
251 |
tacattaaaaattgatgatgcataggctagtacttgacatttaactcttctctgcctcaccaacaaatttgtgagaagagcatgctgatg |
340 |
Q |
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| T |
18317273 |
tatattaaaaattgatgatgcataggctagtacttgacatttaactcttctctgcctcaccaacaaatttgtgagaagagcatgctgatg |
18317184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 51 - 340
Target Start/End: Original strand, 4492773 - 4493062
Alignment:
| Q |
51 |
attgaatcagatgcttagaagaaggagctgaagaattctttctgaaaccagttcaacaatcagatgtgaacaagctgaaaccacatttgttgaagacaaa |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4492773 |
attgaatcagatgcttagaagaaggagctgaagaattctttctgaaaccagttcaacaatcagatgtgaacaagctgaaaccacatttgttgaagacaaa |
4492872 |
T |
|
| Q |
151 |
agttaagaatgaagatgacctaatcaacaacaaaagaaggatacataacaatgcaattccattgaaaaactaggcaaaaaatgtaacctataaaagtggt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4492873 |
agttaagaatgaagatgacctaatcaacaacaaaagaaggatacataacaatgcaattccattgaaaaactaggcaaaaaatgtaacctataaaagtggt |
4492972 |
T |
|
| Q |
251 |
tacattaaaaattgatgatgcataggctagtacttgacatttaactcttctctgcctcaccaacaaatttgtgagaagagcatgctgatg |
340 |
Q |
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| T |
4492973 |
tatattaaaaattgatgatgcataggctagtacttgacatttaactcttctctgcctcaccaacaaatttgtgagaagagcatgctgatg |
4493062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 1614543 - 1614649
Alignment:
| Q |
51 |
attgaatcagatgcttagaagaaggagctgaagaattctttctgaaaccagttcaacaatcagatgtgaacaagctgaaaccacatttgttgaagacaaa |
150 |
Q |
| |
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|||| |||| ||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||| |
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| T |
1614543 |
attgtatcaaatgttttgaagaaggagctgaagaattcttcctgaaaccagttcaacaatcagatgtaaacaagctgaagcctcatttgttgaaatcaag |
1614642 |
T |
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| Q |
151 |
agttaag |
157 |
Q |
| |
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||||||| |
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| T |
1614643 |
agttaag |
1614649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 14324771 - 14324670
Alignment:
| Q |
56 |
atcagatgcttagaagaaggagctgaagaattctttctgaaaccagttcaacaatcagatgtgaacaagctgaaaccacatttgttgaagacaaaagtta |
155 |
Q |
| |
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|||||||| || ||||| || |||||||||||||| |||||||||||||||| ||||||||| | ||||||||| |||||||||||||| ||||||||| |
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| T |
14324771 |
atcagatgtttggaagagggggctgaagaattcttcctgaaaccagttcaactatcagatgtaagcaagctgaagccacatttgttgaaatcaaaagtta |
14324672 |
T |
|
| Q |
156 |
ag |
157 |
Q |
| |
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|| |
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| T |
14324671 |
ag |
14324670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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