View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_high_23 (Length: 288)
Name: NF8985_high_23
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 40472849 - 40472588
Alignment:
| Q |
1 |
ctcaggtgaacattcagtgcaacataccataatgcagtgttttaaaaaccga-ctggaagttccaaccgagtgaaccttgaacggaccactactatggtg |
99 |
Q |
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| T |
40472849 |
ctcaggtgaacattcagtgcaacataccataatgcagtgttttaaaaactgaactggaagttccaaccgagtgaaccttgaacggaccactactatggtg |
40472750 |
T |
|
| Q |
100 |
tggttattttggcggttcgattttggtttcgtctcgattcgagtggtttaagacggttgaatcatgacctagaggtcatgccggattgatgtccgttttg |
199 |
Q |
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| T |
40472749 |
tggttattttggcagttcgattttggtttcgtctcgattcgagcggtttaagacggttgaatcatgacctagaggtcatgccggattgatgtccgttttg |
40472650 |
T |
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| Q |
200 |
gtttttaaaacattgccatactgttttgaaatgcttcttggtttctaatgtatgttgtgttt |
261 |
Q |
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| T |
40472649 |
gtttttaaaacattgccatactgttttgaaatgcttcttggtttctaatgtatgttgtgttt |
40472588 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 15190546 - 15190591
Alignment:
| Q |
170 |
agaggtcatgccggattgatgtccgttttggtttttaaaacattgc |
215 |
Q |
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| T |
15190546 |
agaggtcttgccggtttgatgtctgctttggtttttaaaacattgc |
15190591 |
T |
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