View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_high_27 (Length: 245)
Name: NF8985_high_27
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 490549 - 490765
Alignment:
| Q |
18 |
ttattgagatgagaacgttaaaggatcaaaatgaccagattgaaaaagtaatagaggggaagggatttggggggttttaacttttcttgaaaggatataa |
117 |
Q |
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| T |
490549 |
ttattgagatgataacgttaaaggatcaaaatgatcagattgaaaaagtaatagaggggaagggatttgggggtttttaacttttcttgaaaggatacaa |
490648 |
T |
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| Q |
118 |
tgcgtacatatagagtgctatcccacacttaccatccttttaacacatacttttccatcttgtatgtataatcattctcaccccatgagctcctcggtat |
217 |
Q |
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| T |
490649 |
tgcctacatat--agtgctatcccacacttaccatccttttaacacatacttttccatct----tgtataatcattctcaccccatgagctcctcggtat |
490742 |
T |
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| Q |
218 |
tcattaatcggtacctttctcgg |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
490743 |
tcattaatcggtacctttctcgg |
490765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 492927 - 493132
Alignment:
| Q |
18 |
ttattgagatgagaacgttaaaggatcaaaatgaccagattgaaaaagtaatagaggggaagggatttggggggttttaacttttcttgaaaggatataa |
117 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||| | ||||||||||| || |||||| |
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| T |
492927 |
ttattgagatgataacgttgaaggatcaaaatgaccagattaaaaaagtgatggaggggaagggatttggagggttctgacttttcttgatagaatataa |
493026 |
T |
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| Q |
118 |
tgcgtacatatagagtgctatcccacacttaccatccttttaacacatacttttccatcttgtatgtataatcattctcaccccatgagctcctcggtat |
217 |
Q |
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| T |
493027 |
tggctac--atacattgttatcctacacttacaattcttttaacacattcttttcc-------atttataaccattatgaccccatgagcttctcggtat |
493117 |
T |
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| Q |
218 |
tcattaatcggtacc |
232 |
Q |
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||||||| ||||||| |
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| T |
493118 |
tcattaaccggtacc |
493132 |
T |
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