View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_high_28 (Length: 240)
Name: NF8985_high_28
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 18317585 - 18317781
Alignment:
| Q |
1 |
ctgttaatccttgatggaacattctctgaggacataatcaccactggtatgtctttaagagaattagattcctaaaaatcaatatattttcttagttttc |
100 |
Q |
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| T |
18317585 |
ctgttaatccttgatggaacattctctgaggacataatcaccactggtatgtctttaagagaattagattcctgcaaatcaatatattttcttagttttc |
18317684 |
T |
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| Q |
101 |
tagcattaaacaagag-----acaagcaattttatgttatgattactatcaaaaaattggtttgaaatttgtttttgttatattgaacattttatttt |
193 |
Q |
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| T |
18317685 |
tagcattaaagaagagatgatacaagcaattttatgttatggttactatcaaaatattggtttcaaattt-cttttgttatattgtacattttatttt |
18317781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 4492661 - 4492466
Alignment:
| Q |
1 |
ctgttaatccttgatggaacattctctgaggacataatcaccactggtatgtctttaagagaattagattcctaaaaatcaatatattttcttagttttc |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4492661 |
ctgttaatccttgatgga-cattctctgaggacataatcaccactggtatgtctttaagagaattagattcctgcaaatcaatatattttcttagttttc |
4492563 |
T |
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| Q |
101 |
tagcattaaacaagag-----acaagcaattttatgttatgattactatcaaaaaattggtttgaaatttgtttttgttatattgaacattttatttt |
193 |
Q |
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| T |
4492562 |
tagcattaaagaagagatgatacaagcaattttatgttatggttactatcaaaatattggtttcaaattt-cttttgttatattgtacattttatttt |
4492466 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 35461974 - 35462022
Alignment:
| Q |
4 |
ttaatccttgatggaacattctctgaggacataatcaccactggtatgt |
52 |
Q |
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| T |
35461974 |
ttaatccttgaaggaacattctcagatgacataatcaccactggtatgt |
35462022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 14324947 - 14325002
Alignment:
| Q |
1 |
ctgttaatccttgatggaacattctctgaggacataatcaccactggtatgtcttt |
56 |
Q |
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| T |
14324947 |
ctgttgatcctagatggaacattctccgaggacattatcacaactggtatgtcttt |
14325002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 58
Target Start/End: Complemental strand, 1614383 - 1614332
Alignment:
| Q |
7 |
atccttgatggaacattctctgaggacataatcaccactggtatgtctttaa |
58 |
Q |
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| T |
1614383 |
atccgtgatgaaacattctctgaagacataatcacaaccggtatgtctttaa |
1614332 |
T |
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