View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_1 (Length: 1304)
Name: NF8985_low_1
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 889; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 889; E-Value: 0
Query Start/End: Original strand, 271 - 1288
Target Start/End: Complemental strand, 7301023 - 7300021
Alignment:
| Q |
271 |
gtgggttgatacagaggggtaataatgtaatgtaatgatggaaatggtgaagatcaaatataggttgattttgatcaaagtgattatagttaatccagtt |
370 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7301023 |
gtgggttgatacagaggggtaataatgtaatgtaatgatggaaatggtgaagatcaaatataggttgattttgatcaaagtgattat------------- |
7300937 |
T |
|
| Q |
371 |
atttggaaactgataatctttttatgattatttctcgnnnnnnncttccacaggaaaatgaaacattgttgtttcgagaaaagtgttaaaggactgctaa |
470 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300936 |
--ttggaaactgataatctttttatgattatttctcgtttttttcttccacaggaaaatgaaacattgttgtttcgagaaaagtgttaaaggactgctaa |
7300839 |
T |
|
| Q |
471 |
aagcccatcagagctttcattcatcaatatcattcattcaactagcccttaattatttttagtctaggattagattaaattagaatagaaaatgctaagt |
570 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300838 |
aagcccaccagagctttcattcatcaatatcattcattcaactagcccttaattatttttagtctaggattagattaaattagaatagaaaatgctaagt |
7300739 |
T |
|
| Q |
571 |
ataaaattaattagtaccattaattgaaagttagggagtcctagattcaatcaaaggaggattcacaattgggattttattttccaatcctctcttggtt |
670 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300738 |
ataaaattaattagtaccattaattgaaagttagggagtcctagattcaatcaaatgaggattcacaattgggattttattttccaatcctctcttggtt |
7300639 |
T |
|
| Q |
671 |
aagcattttatgaatatacattgtcgtgtgccttaggttagacatgcgtctttggattgacagtgagtttgatgaaattatggtgtgccagcgtgatttt |
770 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300638 |
aagcattttatgaatatacattgtcgtgtgccttaggttagacatgcgtctttggattgacagtgagtttgatgaaattatggtgtgccagcgtgatttt |
7300539 |
T |
|
| Q |
771 |
gacaaaagttactttggaagcgatttcgttaaactcgctgttcatctaaacatacacctggtggttcataggttttagtaaaattgttctcatatatgtc |
870 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300538 |
gacaaaagttactttggaagcgatttcgttaaactcgctgttcatctaaacatacacctggtggttcataggttttagtaaaattgttctcatatatgtc |
7300439 |
T |
|
| Q |
871 |
ccttttaggtataattgtgaagtgtttcaatttcacaataagtttgtgtcattcctagaagaaaaaccaaaagtagataggnnnnnnnnnngatttaccc |
970 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7300438 |
ccttttaggtatagttgtgaagtctttcaatttcacaataagtttgtgtcattcctagaagaaaaaccaaaagtagatagaaaaaaaaaaagatttaccc |
7300339 |
T |
|
| Q |
971 |
aaactctgtaaaattttgtgatacaggtagccaaaacactccaaagtctgcttcctacaccgggaataaaggtgtcagattcagtaagaaaagaatatga |
1070 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7300338 |
aaactctgtaaaattttgtgatacaggtagccaaaacactccaaagtctgcttcctacaccgggaataaaggtgtcagattcagtaagaaaagaatatga |
7300239 |
T |
|
| Q |
1071 |
agaaatggagaaaaagaagttggccatagatgaagaagccgaagccttggttgatcgtgaactttggggaggtttgggtttcgttatggtgaaaacagca |
1170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7300238 |
agaaatggagaaaaagaagttggccatagatgaagaagccgaagccttggttgatcgtgaactttggggaggtttgggtttcattatggtgaaaacagca |
7300139 |
T |
|
| Q |
1171 |
gtattaatgagactcaccttttgggagcttacttgggatgtaatggaaccaatttgcttctatttaacatccatgtacttcatgactggttatacattct |
1270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7300138 |
gtattaatgagactcaccttttgggagcttacttgggatgtaatggaacccatttgcttctatttaacatccatgtacttcatgactggttatacattct |
7300039 |
T |
|
| Q |
1271 |
tcctcaagaccgggaaag |
1288 |
Q |
| |
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|||||||||||||||||| |
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| T |
7300038 |
tcctcaagaccgggaaag |
7300021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 8e-86
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 7301276 - 7301107
Alignment:
| Q |
18 |
atcaaggttgagagaatcatcaaagagttgtgtaacggtttcggagttgattcggatttgttctgaatattgttccgatcatgatcaagcggttaagatt |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7301276 |
atcaaggctgagagaatcatcaaagagttgtgtaacggtttcggagttgattaggatttgttctgaatattgttccgatcatgatcaagcggttaagatt |
7301177 |
T |
|
| Q |
118 |
gtgaaaatgcttgatgattctgcggctgtgattattctaggagatgttgtttttcttagacctgaacagg |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7301176 |
gtgaaaatgcttgatgattctgcggctgtgattattctaggagatgttgtttttcttagacctgaacagg |
7301107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1177 - 1276
Target Start/End: Original strand, 33313670 - 33313769
Alignment:
| Q |
1177 |
atgagactcaccttttgggagcttacttgggatgtaatggaaccaatttgcttctatttaacatccatgtacttcatgactggttatacattcttcctca |
1276 |
Q |
| |
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||||| ||||| |||||||| |||| |||||||||||||| || || ||||||||| ||||| |||||||||||| |||| || |||||||| |||| |
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| T |
33313670 |
atgaggctcacattttgggaacttaactgggatgtaatggagcccatatgcttctatgcgacatctatgtacttcatggctggctacacattctttctca |
33313769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 33310693 - 33310794
Alignment:
| Q |
86 |
attgttccgatcatgatcaagcggttaagattgtgaaaatgcttgatgattctgcggctgtgattattctaggagatgttgtttttcttagacctgaaca |
185 |
Q |
| |
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||||||||||||| || |||||| ||||||| ||| || || ||||||||||| |||||||||| |||| ||||| ||||| || | ||||||||| |
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| T |
33310693 |
attgttccgatcaggaacaagcgaagaagattgcgaagattctagatgattctgcaactgtgattatcttaggcgatgtcgttttcctcaaacctgaaca |
33310792 |
T |
|
| Q |
186 |
gg |
187 |
Q |
| |
|
|| |
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|
| T |
33310793 |
gg |
33310794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 719 - 769
Target Start/End: Complemental strand, 42657591 - 42657541
Alignment:
| Q |
719 |
tctttggattgacagtgagtttgatgaaattatggtgtgccagcgtgattt |
769 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||||||||| ||||||| |
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|
| T |
42657591 |
tctttggattgacaatgagtttgatgaaattacggtgtgccattgtgattt |
42657541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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