View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8985_low_12 (Length: 708)
Name: NF8985_low_12
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_12 |
 | |
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| [»] scaffold0141 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 574; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 93 - 690
Target Start/End: Complemental strand, 4134219 - 4133622
Alignment:
| Q |
93 |
ggacggttcagcctggtgaaaaggtttttatggtggtttcttggagcagcatagaattgtgcattattgatacggttgcaatgttgaatagagtgtccta |
192 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4134219 |
ggacggttcagcctggtgaaaaggtttttctggtggtttcttggagcagcataggattgtgcattattgatacggttgcaatcttgaatagagtgtccta |
4134120 |
T |
|
| Q |
193 |
acatcttacaatgagagcaaaatgatggcctgcgttcatactcaacggttaccgggaaagcataaccttccctctcaaccacaacagaatcaaaaagttt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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|
| T |
4134119 |
acatcttacaatgagagcaaaatgatggcctgcgttcatactcaacggttaccgggaaagcataaccttccctctcaaccacaacagaattaaaaagtgt |
4134020 |
T |
|
| Q |
293 |
atcagacatatccacatcaacaagaatacgagcgtagtgaccaaaaagacgggattgtgttgcttcatctatagttagaggggtaccaattcctgatgca |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134019 |
atcagacatatccacatcaacaagaatacgagcgtagtgaccaaaaagacgggattgtgttgcttcatctatagttagaggggtaccaattcctgatgca |
4133920 |
T |
|
| Q |
393 |
atttcaaataaagtgatctttctccaatgttcttggggaagattcagaagtcttacccacaattgagcgtgagattgtgtttgattgtgaggatcgaagt |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4133919 |
atttcaaataaagtgatctttctccaatgttcttggggaagattcagaagtcttacccacaattgagcgtgagattgtgtttgattgtgaggatcgaagt |
4133820 |
T |
|
| Q |
493 |
ctttagaccagcaaaagaaacgcaggagcccaggcttcagctgaacagcacccaacgcccagaccttcttcatctcttccattgagtgaaaattgaactt |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4133819 |
ctttagaccagcaaaagaaacgcaggagcccaggcttcagctgaacagcacccaacgcccagaccttcttcatctcttccatcgagtgaaaattgaactt |
4133720 |
T |
|
| Q |
593 |
gaagaaacctctgccaagcgggagtgatggcccaaggtttcaaatttggccacatactttccaatttctgcttcaggaatttcgttgacagagagttc |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4133719 |
gaagaaacctctgccaagcgggagtgatggcccaaggtttcaaatttggccacatactttccaatttctgcttcaggaatttcgttgacagagagttc |
4133622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 165 - 665
Target Start/End: Complemental strand, 16892460 - 16891962
Alignment:
| Q |
165 |
cggttgcaatgttgaatagagtgtcctaacatcttacaatgagagcaaaatgatggcctgcgttcatactcaacggttaccgggaaagcataaccttccc |
264 |
Q |
| |
|
||||||||| | ||||||||||| ||||||| |||||| | | | |||||||| ||| | || |||||||| || | ||||||||| || ||||||||| |
|
|
| T |
16892460 |
cggttgcaaagctgaatagagtgacctaacaacttacagttataacaaaatgaaggcttacgctcatactccacagctaccgggaagacaaaaccttccc |
16892361 |
T |
|
| Q |
265 |
tctcaaccacaacagaatcaaaaagtttatcagacatatccacatcaacaagaatacgagcgtagtgaccaaaaagacgggattgtgttgcttcatctat |
364 |
Q |
| |
|
|||||||||| || |||||||| || ||| |||||||||||||| | |||||||| | ||||| ||||||||||||||| || | ||||||||||| |
|
|
| T |
16892360 |
tctcaaccaccaccgaatcaaacagcttactggacatatccacatccatgagaatacgcacatagtgcccaaaaagacgggatcgtatggcttcatctat |
16892261 |
T |
|
| Q |
365 |
agttagaggggtaccaattcctgatgcaatttcaaataaagtgatctttctccaatgttcttggggaagattcagaagtcttacccacaattgagcgtga |
464 |
Q |
| |
|
||| || ||||||||||| |||||||| |||||||||| ||| |||| ||||||| |||||| || ||||| | || ||||||||||| || ||||| |
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|
| T |
16892260 |
agtgag-ggggtaccaatacctgatgcgatttcaaatagtgtggtcttcctccaatattcttgagggagatttatgagccttacccacaactgcgcgtgt |
16892162 |
T |
|
| Q |
465 |
gattgtgtttgattgtgaggatcgaagtctttagaccagcaaaagaaacgcaggagcccaggcttcagctgaacagcacccaacgcccagaccttcttca |
564 |
Q |
| |
|
|| || | || || |||||||| ||||||||||||||||| ||||| | | | || ||||| | ||||||| |||| || ||||| |||||||||| |
|
|
| T |
16892161 |
gactgaatctggttttgaggatcaaagtctttagaccagcagaagaatcttaatattcctggctttaactgaacaacaccgaatgcccataccttcttca |
16892062 |
T |
|
| Q |
565 |
tctcttccattgagtgaaaattgaacttgaagaaacctctgccaagcgggagtgatggcccaaggtttcaaatttggccacatactttccaatttctgct |
664 |
Q |
| |
|
||||||| || ||||| || ||||| |||||| |||||||||||||| |||||||||| |||||| |||| || |||||| | | |||||| ||||||| |
|
|
| T |
16892061 |
tctcttcaatggagtggaagttgaatttgaagtaacctctgccaagc-ggagtgatggaccaaggcttcagatgtggccaaaacccttccaacttctgct |
16891963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 159 - 685
Target Start/End: Complemental strand, 19851712 - 19851187
Alignment:
| Q |
159 |
ttgatacggttgcaatgttgaatagagtgtcctaacatcttacaatgagagcaaaatgatggcctgcgttcatactcaacggttaccgggaaagcataac |
258 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |||| || | |||||||||||||| | ||||||||| ||||||| |
|
|
| T |
19851712 |
ttgatacggttgcaatgttgaatagagcgacctaacaacttacaatgagagcagaatggcggtttacgttcatactcaacagctaccgggaaggcataac |
19851613 |
T |
|
| Q |
259 |
cttccctctcaaccacaacagaatcaaaaagtttatcagacatatccacatcaacaagaatacgagcgtagtgaccaaaaagacgggattgtgttgcttc |
358 |
Q |
| |
|
|||||||||||||||| |||||||||||||| || | ||||||||||||||||| |||||||| || ||||||||||| |||||||| ||||| ||||| |
|
|
| T |
19851612 |
cttccctctcaaccaccacagaatcaaaaagctttccggacatatccacatcaacgagaatacgtgcatagtgaccaaatagacgggactgtgtggcttc |
19851513 |
T |
|
| Q |
359 |
atctatagttagaggggtaccaattcctgatgcaatttcaaataaagtgatctttctccaatgttcttggggaagattcagaagtcttacccacaattga |
458 |
Q |
| |
|
||| ||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
19851512 |
atcaatagtgaggggggtaccaattcctgatgcaatttcaaataaagtggtcttcctccaatattcttgggggagattcataaaccttacccacaattga |
19851413 |
T |
|
| Q |
459 |
gcgtgagattgtgtttgattgtgaggatcgaagtctttagaccagcaaaagaaacgcaggagcccaggcttcagctgaacagcacccaacgcccagacct |
558 |
Q |
| |
|
|| |||||||| | ||||| |||||||| || || ||||||||||||||||| | ||| | ||||||||||| ||||||| ||||||||||||| ||| |
|
|
| T |
19851412 |
gcatgagattgaatctgattttgaggatcaaaatccttagaccagcaaaagaatctcagcatcccaggcttcaactgaacaacacccaacgcccaaaccc |
19851313 |
T |
|
| Q |
559 |
tcttcatctcttccattgagtgaaaattgaacttgaagaaacctctgccaagcgggagtgatggcccaaggtttcaaatttggccacatactttccaatt |
658 |
Q |
| |
|
||||||||||||| || ||||| ||||||||||||||| ||||||| |||||| ||||| |||| ||| ||||||||||| |||||||||| ||||| || |
|
|
| T |
19851312 |
tcttcatctcttcaatggagtggaaattgaacttgaagtaacctctaccaagc-ggagtaatggaccagggtttcaaattcggccacataccttccagtt |
19851214 |
T |
|
| Q |
659 |
tctgcttcaggaatttcgttgacagag |
685 |
Q |
| |
|
||||||||| ||| |||| |||||||| |
|
|
| T |
19851213 |
tctgcttcaagaacttcgatgacagag |
19851187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 165 - 644
Target Start/End: Original strand, 12580836 - 12581314
Alignment:
| Q |
165 |
cggttgcaatgttgaatagagtgtcctaacatcttacaatgagagcaaaatgatggcctgcgttcatactcaacggttaccgggaaagcataaccttccc |
264 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||| ||| | |||||||| ||| | || |||||||| || | ||||||||| ||| ||||||||| |
|
|
| T |
12580836 |
cggttgcaatgctgaatagagtgacctaacaacttacagtgataacaaaatgaaggcttacgctcatactccacagctaccgggaaggcaaaaccttccc |
12580935 |
T |
|
| Q |
265 |
tctcaaccacaacagaatcaaaaagtttatcagacatatccacatcaacaagaatacgagcgtagtgaccaaaaagacgggattgtgttgcttcatctat |
364 |
Q |
| |
|
|||||||||| | |||||||| || ||| | |||||||||||||| || |||||||| || ||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
12580936 |
tctcaaccaccatcgaatcaaacagcttaccggacatatccacatccacgagaatacgtgcatagtgcccaaaaagacgggattgtgtgccttcatctat |
12581035 |
T |
|
| Q |
365 |
agttagaggggtaccaattcctgatgcaatttcaaataaagtgatctttctccaatgttcttggggaagattcagaagtcttacccacaattgagcgtga |
464 |
Q |
| |
|
||| |||||||||||||| || ||||| |||||||||| ||| |||| ||||||| |||||| || |||||| || ||||||||||| || |||| |
|
|
| T |
12581036 |
agtgagaggggtaccaataccggatgcgatttcaaatagtgtggtcttcctccaatattcttgagggggattcatgagccttacccacaactgcacgtgt |
12581135 |
T |
|
| Q |
465 |
gattgtgtttgattgtgaggatcgaagtctttagaccagcaaaagaaacgcaggagcccaggcttcagctgaacagcacccaacgcccagaccttcttca |
564 |
Q |
| |
|
|| || | || || |||||||| |||||||||||| |||| ||||| | | | || |||| | ||||||| ||||||| ||||| |||||||||| |
|
|
| T |
12581136 |
gactgaatctggttttgaggatcaaagtctttagacgagcagaagaatcttaatattcctagctttaactgaacaacacccaatgcccataccttcttca |
12581235 |
T |
|
| Q |
565 |
tctcttccattgagtgaaaattgaacttgaagaaacctctgccaagcgggagtgatggcccaaggtttcaaatttggcca |
644 |
Q |
| |
|
||||||| || ||||| || ||||| |||||| |||| |||||||| ||||||||||| |||||| |||| || |||||| |
|
|
| T |
12581236 |
tctcttcaatggagtggaagttgaatttgaagtaacccctgccaag-gggagtgatggaccaaggcttcagatgtggcca |
12581314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 19851844 - 19851804
Alignment:
| Q |
39 |
gattgaagggattctaatttggagtaaattggttgttgagt |
79 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
19851844 |
gattgaagggactctaaattagagtaaattggttgttgagt |
19851804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 37048831 - 37048787
Alignment:
| Q |
488 |
gaagtctttagaccagcaaaagaaacgcaggagcccaggcttcag |
532 |
Q |
| |
|
|||| |||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
37048831 |
gaaggctttagtccagcaaaagaaacgcagaaacccaggcttcag |
37048787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0141 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: scaffold0141
Description:
Target: scaffold0141; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 16 - 333
Target Start/End: Original strand, 17318 - 17637
Alignment:
| Q |
16 |
agacatcgtgcttgtgaatgttggattgaagggattctaatttggagtaaattggttgttgagtgagtcgnnnnnnn-ggacggttcagcctggtgaaaa |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||| |
|
|
| T |
17318 |
agacatcgtacttgtgaatgttggattgaagggactctaatttggagtaaattggttgttgagtgggtcggtttttttggacggttcagtctgttgaaaa |
17417 |
T |
|
| Q |
115 |
ggttttta-tggtggtttcttggagcagcatagaattgtgcattattgatacggttgcaatgttgaatagagtgtcctaacatcttacaatgagagcaaa |
213 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
17418 |
ggttttttctggtggtttcttggagcagcataggattgtgcattattgatacggttacaatgttgaatagagtgtcctaacatcttacaatgagagaaaa |
17517 |
T |
|
| Q |
214 |
atgatggcctgcgttcatactcaacggttaccgggaaagcataaccttccctctcaaccacaacagaatcaaaaagtttatcagacatatccacatcaac |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17518 |
atgatggcctgcgttcatactcaacggttaccgggaagacataaccttccctctcaaccataacagaatcaaaaaatttaccagacatatccacatcaac |
17617 |
T |
|
| Q |
314 |
aagaatacgagcgtagtgac |
333 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17618 |
gagaatacgagcgtagtgac |
17637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 331
Target Start/End: Complemental strand, 8424329 - 8424011
Alignment:
| Q |
16 |
agacatcgtgcttgtgaatgttggattgaagggattctaatttggagtaaattggttgttgagtgagtcgnnnnnnn--ggacggttcagcctggtgaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
8424329 |
agacatcgtgcttgtgaatgttggattgaagggactctaatttggagtaaattggttgttgagtgagtcggttttttttggacggttcagcctgttgaaa |
8424230 |
T |
|
| Q |
114 |
aggttttta-tggtggtttcttggagcagcatagaattgtgcattattgatacggttgcaatgttgaatagagtgtcctaacatcttacaatgagagcaa |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
8424229 |
aggttttttctggtggtttcttggagcagcataggattgtgcattattgatacggttgcaatgttgaataaagtgtcctaacatcttacaatgagagaaa |
8424130 |
T |
|
| Q |
213 |
aatgatggcctgcgttcatactcaacggttaccgggaaagcataaccttccctctcaaccacaacagaatcaaaaagtttatcagacatatccacatcaa |
312 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || |||| || ||||||||||||||| |
|
|
| T |
8424129 |
aatgatggaatgcgttcatactcaacggttaccgagaaaacataaccttccctctcaaccacaacagaataaatttttttaccaaacatatccacatcaa |
8424030 |
T |
|
| Q |
313 |
caagaatacgagcgtagtg |
331 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
8424029 |
cgagaatacgagcgtagtg |
8424011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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