View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_16 (Length: 676)
Name: NF8985_low_16
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_16 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 16920842 - 16920375
Alignment:
| Q |
18 |
gtaacaaacaaaagacttgtatataaaaacataaggtagatacgtgattctctattcattatggagtttgaaaactgaatctaattccaattcccctttt |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16920842 |
gtaacaaacaaaaggcttgtatataaaaacataaggtagatacgtgattctctattcattatggagtttgaaaactgaatctaattccaattcccctttt |
16920743 |
T |
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| Q |
118 |
tgttgatagacatgagtctgatctgatcacttggaacataatagaagttcaaatttcaaaagctaataatattctctaatcaaattgaaagtttggtttg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16920742 |
tgttgatagacatgagtctgatctgatcacttggaacataatagaagttcaaatttcaaaagctaataatattctctaatcgaattgaaagtttggtttg |
16920643 |
T |
|
| Q |
218 |
aaaatgtcttcatcgattagtaggtattcttaagtgaaaaacaaggcaattaacacaattatttgtgtatctatctttcttactatgaaccaccggttca |
317 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || |||||| ||| | ||| |
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| T |
16920642 |
aaaatgtcttcatcaattagtaggtattcttaagtgaaaaacaaggcaattaacacaattatctttgtatctatctttctcacgatgaactacctgctca |
16920543 |
T |
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| Q |
318 |
aacaacgaacacaagactgatacgtagacactaagaataatttaagaaaatagaagtagttgaatgtaacatgtgtcgatgtcatgataaaatagttatt |
417 |
Q |
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|||| |||| ||||||||||||||||||||| |||||||||| | ||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
16920542 |
aacaccgaatacaagactgatacgtagacaccgagaataattttaaaaaatggaagtaattgaatgtaacatgtgtcgatgtcatgaaaaaatagttatt |
16920443 |
T |
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| Q |
418 |
tactacttctaaaatccatctcaatctttttgatggatttaaaaaagaactagctaaaatatttaaat |
485 |
Q |
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| T |
16920442 |
tactacgtctaatttccatctcgatctttttgatggatttaagaaagtacatgctaaaatatttaaat |
16920375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 516 - 664
Target Start/End: Complemental strand, 16920339 - 16920192
Alignment:
| Q |
516 |
aaatatttctcaaatattcggacgaatttcatatagatattttnnnnnnntaattattccatcccgagtttatcataaatatgttttaaaatttaatgca |
615 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
16920339 |
aaatatttctcaaatattcggacgaattttatatagatatta-aaaaaaataattattccatctcgagtttatcataaatatgttttaaaatttaatgta |
16920241 |
T |
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| Q |
616 |
acttacgacgtagtatgttcttttcgaaaatacaattttttcagtagta |
664 |
Q |
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| T |
16920240 |
acttacgacatagtatgttccgtccgaaaatacaattttttcaatagta |
16920192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 2461580 - 2461686
Alignment:
| Q |
151 |
gaacataatagaagttcaaattt-caaaagctaataatattctctaatcaaattgaaagtttggtttgaaaatgtcttcatcgattagtaggtattctta |
249 |
Q |
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||||| || ||||||| |||||| |||||||||| ||||||||||||||||||||||| || ||| ||||||||||||| ||||||||||| ||| | |
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| T |
2461580 |
gaacagaaaagaagttgaaattttcaaaagctaagaatattctctaatcaaattgaaacattatcttgtaaatgtcttcatcaattagtaggtactctaa |
2461679 |
T |
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| Q |
250 |
agtgaaa |
256 |
Q |
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||||||| |
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| T |
2461680 |
agtgaaa |
2461686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 17105251 - 17105305
Alignment:
| Q |
333 |
actgatacgtagacactaagaataatttaagaaaatagaagtagttgaatgtaac |
387 |
Q |
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| T |
17105251 |
actgacacatagacactaataataatttaagaaaataaaagtgattgaatgtaac |
17105305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 326 - 386
Target Start/End: Original strand, 31702669 - 31702729
Alignment:
| Q |
326 |
acacaagactgatacgtagacactaagaataatttaagaaaatagaagtagttgaatgtaa |
386 |
Q |
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| T |
31702669 |
acacaacactgatatatagacaccaataataatttaagaaaatagtagtgattgaatgtaa |
31702729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 387
Target Start/End: Original strand, 86861 - 86896
Alignment:
| Q |
352 |
gaataatttaagaaaatagaagtagttgaatgtaac |
387 |
Q |
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| T |
86861 |
gaataatttaagaaaatagaagttgttgaatgtaac |
86896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 29236255 - 29236301
Alignment:
| Q |
341 |
gtagacactaagaataatttaagaaaatagaagtagttgaatgtaac |
387 |
Q |
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| T |
29236255 |
gtagacactaataataatttgagaaaatagaagtgattgaatgtaac |
29236301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 383
Target Start/End: Complemental strand, 10666681 - 10666640
Alignment:
| Q |
342 |
tagacactaagaataatttaagaaaatagaagtagttgaatg |
383 |
Q |
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|||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
10666681 |
tagacactaataataatttgagaaaatagaagtaattgaatg |
10666640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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