View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_17 (Length: 647)
Name: NF8985_low_17
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 18 - 634
Target Start/End: Complemental strand, 28319825 - 28319205
Alignment:
| Q |
18 |
aaacaagttacataattgcattttcttcacataattcacatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28319825 |
aaacaagttacataattgcattttcttcacataattcacatagaaatatatctttccagctatcatattctcctgaatcttcaaatatggcttgaaacaa |
28319726 |
T |
|
| Q |
118 |
acgttcccttagcaattgaggtcttgannnnnnnnnnnnnnnnngttctattttctactcggcaaaagatcaaaagttgtaaaacttgatgaaacctggg |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319725 |
acgttcccttagcaattgaggtcttgattttattttttttt---gttctattttctactcggcaaaagatcaaaagttgtaaaacttgatgaaacctggg |
28319629 |
T |
|
| Q |
218 |
atgatttatacaacaaaactcagatttaaagggtgtaagcaacaatataatgtcnnnnnnnn-ttagttttttggatcactttcataggtattttgatga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28319628 |
atgatttatacaacaaaactcagatttaaagggtgtaagcaacaatataatgtcaaaaaaaaattagttttttggatcactttcataggtattttgatga |
28319529 |
T |
|
| Q |
317 |
gcaagtttaccttttattgtattttgactggacaaatttgttgaatataaacacaaaatcaaagaacaataaagatgaagaaaagaactatacaacttag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28319528 |
gcaagtttaccttttattgtattttgactggacaaatttgttgaatataaacacaaaatcaaagaacaataaagatgaagaaaagaactatacaacttag |
28319429 |
T |
|
| Q |
417 |
gtggtgggatggtgacaatgcaatttcgaattaattttactaaagttgaagtttgttattaagccaaattactattactgtgcccagtg------tgtaa |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28319428 |
gtggtgggatggtgacaatgcaatttcgaattaattttactaaagttgaagtttgttattaagccaaattactattactgtgcccagtgtacctatgtaa |
28319329 |
T |
|
| Q |
511 |
gttacttcatatctttatttgattatttggtacaagtttttaacatttctctcgacattacaagagactagctttttgtacaagtttattgttaaatgaa |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
28319328 |
gttacttcatatctttatttgattatttggtacaagtttttaacatttctctcgacattacaggagactagctttttgtacaagttcattgttaaatgaa |
28319229 |
T |
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| Q |
611 |
ttgtattttcttagactctctgct |
634 |
Q |
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||||||||||||||||||| |||| |
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| T |
28319228 |
ttgtattttcttagactctttgct |
28319205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 41967264 - 41967199
Alignment:
| Q |
55 |
acatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaacg |
120 |
Q |
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|||||||||||||||||||| ||||||||||| || ||||||| |||||| ||| ||||||||| |
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| T |
41967264 |
acatagaaatatatcttttctgctatcatatttccaggaatctttaaatataacttaaaacaaacg |
41967199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 15914332 - 15914396
Alignment:
| Q |
55 |
acatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaac |
119 |
Q |
| |
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|||||||||||||||||| | |||| ||||||| ||| ||||| ||||||| |||||||||||| |
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| T |
15914332 |
acatagaaatatatctttcctgctaccatattcccataaatctctaaatatgacttgaaacaaac |
15914396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 271
Target Start/End: Complemental strand, 24262721 - 24262620
Alignment:
| Q |
169 |
tttctactcggcaaaagatcaaaagttgtaaaacttgatgaaacctgggatgatttatacaacaaaactcagatttaaagggtgtaagcaacaatataat |
268 |
Q |
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|||||||||||||| ||||||||||||||| | ||| |||| ||||||||| ||| ||||| | ||| | ||| |||||| ||| |||||||||||| |
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| T |
24262721 |
tttctactcggcaatagatcaaaagttgtagactttggtgaattctgggatgagttacacaactagacttatattcaaaggg-ctaaacaacaatataat |
24262623 |
T |
|
| Q |
269 |
gtc |
271 |
Q |
| |
|
||| |
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|
| T |
24262622 |
gtc |
24262620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 26655206 - 26655144
Alignment:
| Q |
62 |
aatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaacgttccct |
126 |
Q |
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||||||||||| | |||||||| ||||| |||| | |||||||| ||||||||||||||||||| |
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| T |
26655206 |
aatatatctttcctgctatcat--tctcaagaatttccaaatatgacttgaaacaaacgttccct |
26655144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 30969708 - 30969645
Alignment:
| Q |
55 |
acatagaaatatatcttttcagctatcatattctcatgaatcttcaaatatggcttgaaacaaac |
119 |
Q |
| |
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|||||| ||||| ||||| || |||||||||||||| |||||| ||||||| |||||||||||| |
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| T |
30969708 |
acataggaatatttctttcca-ctatcatattctcaggaatctccaaatataacttgaaacaaac |
30969645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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