View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_20 (Length: 596)
Name: NF8985_low_20
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 36795256 - 36795536
Alignment:
| Q |
1 |
ggaagccgttaagtgcaatgacataagctaaggtaatttggtggggaaattcttaagagttaagaacgtgtttgtttaaatgaaagcatatgagagattc |
100 |
Q |
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| T |
36795256 |
ggaagccgttaagtgcaatgacataagctaaggtaatttggtggggaaattcttaagagttaagaacgtgtttgtttaaatgaaagcat--gagagattc |
36795353 |
T |
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| Q |
101 |
caatggtggatgggataagaggtagaagaaccatacttctcattcatcgcttcccatatttattcctctctaatcaaacaacctattctggtttcaaatt |
200 |
Q |
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| T |
36795354 |
caatggtggatgggataagaggtagaagaaccatacttctcattcatcgcttcccatatttattcctatctaatcaaacaacccattctggtttcaaatt |
36795453 |
T |
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| Q |
201 |
tccttctatgaacacatgataaccgtaagtagaaactcaataattttagattagtaagaatacaatgtgagtagacatgtatt |
283 |
Q |
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| T |
36795454 |
tccttctatgaacacatgattaccttaagtagaaactcaataattttagattagtaagaatgcaatgtaagtagatatgtatt |
36795536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 278 - 564
Target Start/End: Original strand, 36795585 - 36795854
Alignment:
| Q |
278 |
tgtattctagagagtattgcacttcgcatcttgatgatgtaaaatcttctcactgacctaatttctttgttagattcataccacagtccacacatacata |
377 |
Q |
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| T |
36795585 |
tgtattctagagagtattgcacttcgcatcttgatgatgtaaaatcttctcattgaccaaatttctttgttagattcataccacagtccacacatacata |
36795684 |
T |
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| Q |
378 |
tctaaaagtgcttgctcaacattgtattgtcatacattataccatgtgaagttatgtatgttgttgatgtatgttcgttcatctattcgtatacaataat |
477 |
Q |
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| T |
36795685 |
tctaaaagtgcttgctcaacattctattgtcatgcattataccatgtgaagttatgtat-----------------gttcatctactcctatacaataat |
36795767 |
T |
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| Q |
478 |
gacaaacagatgtcattccacaacatgaattaaatcgcatcatcacataaacttagctcagttgataaagatgatgtatactatata |
564 |
Q |
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| T |
36795768 |
gacaaccagatgtcattccaaaacatgaattaaatcacgtcatcacgtaaacttagctcagttgataaagacaatatatactatata |
36795854 |
T |
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