View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_25 (Length: 446)
Name: NF8985_low_25
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 83 - 427
Target Start/End: Complemental strand, 54124139 - 54123795
Alignment:
| Q |
83 |
taacccctgtgattgaagtggtctcatgttaacattctgctgcaaaggtagaaattgctggttcgaaacaggacctgctaacccctgtgattgaggtggt |
182 |
Q |
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| T |
54124139 |
taacccctgtgattgaggtggtctcatgttaacattctgctgcgaaggtagatattgctggttcgcaacagaacctgcgaacccctgtgattgaggcggt |
54124040 |
T |
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| Q |
183 |
ctcatgttagcattctattgcgaaggtagatattgcaggttcccaacaaaacctgctaacccctgtcctctataagcataaccttgagtcgatgttggtc |
282 |
Q |
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| T |
54124039 |
ctcatgttagcaccctgctgagaaggaagatattgctggttcccaacagaacctgctaacccctgtcctctataagcataaccttgactcgatgttggtc |
54123940 |
T |
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| Q |
283 |
cagcagtcacaccaatctgcccaaccgatgaggcagccactggattcagacgttgtggaggtataacatcaaggtttatcggcggtgcagggattttagc |
382 |
Q |
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| T |
54123939 |
cagaagtcacaccaatctgcccaaccgacgaggaagccactggattcggacgctgtggaggtatagcagcaaggtttatctgcggtgcagggattttaga |
54123840 |
T |
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| Q |
383 |
agcagcaggacaaaataacgctgccttcacaatatccggcgttaa |
427 |
Q |
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| T |
54123839 |
agcagcaggaccgaataacgctgccttcacaatatccggagttaa |
54123795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 80 - 248
Target Start/End: Complemental strand, 54124220 - 54124052
Alignment:
| Q |
80 |
tgctaacccctgtgattgaagtggtctcatgttaacattctgctgcaaaggtagaaattgctggttcgaaacaggacctgctaacccctgtgattgaggt |
179 |
Q |
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| T |
54124220 |
tgctaacccctgtgattgaggcggtctcgtgttaatattctgctgcaaaggtagaaattgctggtttgaaataggacctgataacccctgtgattgaggt |
54124121 |
T |
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| Q |
180 |
ggtctcatgttagcattctattgcgaaggtagatattgcaggttcccaacaaaacctgctaacccctgt |
248 |
Q |
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| T |
54124120 |
ggtctcatgttaacattctgctgcgaaggtagatattgctggttcgcaacagaacctgcgaacccctgt |
54124052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 54124291 - 54124155
Alignment:
| Q |
87 |
ccctgtgattgaagtggtctcatgttaacattctgctgcaaaggtagaaattgctggttcgaaacaggacctgctaacccctgtgattgaggtggtctca |
186 |
Q |
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| T |
54124291 |
ccctgtgattgaggtggtctcatagtaggactctgctgcgaaggtagaaactgctggttcccaacaggacctgctaacccctgtgattgaggcggtctcg |
54124192 |
T |
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| Q |
187 |
tgttagcattctattgcgaaggtagatattgcaggtt |
223 |
Q |
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| T |
54124191 |
tgttaatattctgctgcaaaggtagaaattgctggtt |
54124155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 54124291 - 54124208
Alignment:
| Q |
165 |
ccctgtgattgaggtggtctcatgttagcattctattgcgaaggtagatattgcaggttcccaacaaaacctgctaacccctgt |
248 |
Q |
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| T |
54124291 |
ccctgtgattgaggtggtctcatagtaggactctgctgcgaaggtagaaactgctggttcccaacaggacctgctaacccctgt |
54124208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 19851161 - 19851307
Alignment:
| Q |
1 |
gtaatgaattgagacccaaacggagtcaagagaatgcgaaatctgctccagctggaagccggtgacctgccacaaaacttgctaacccct-gtgattgaa |
99 |
Q |
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| T |
19851161 |
gtaatgaattgagacccaaacggagtcaagagacagcgaaatctgctccagctggaagccggtgacctgccacaaaagctgctaacccctggtgattgag |
19851260 |
T |
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| Q |
100 |
gtggtctcatgttaacattctgctgcaaaggtagaaattgctggttc |
146 |
Q |
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| T |
19851261 |
gcggtctcatgttagcaccctgctgagaaggaagataatgctggttc |
19851307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 19851312 - 19851378
Alignment:
| Q |
245 |
ctgtcctctataagcataaccttgagtcgatgttggtccagcagtcacaccaatctgcccaaccgat |
311 |
Q |
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| T |
19851312 |
ctgtcctctataagggaaaacttgagtcgatgttggttcagcagtcacaccagtcttcccaaccgat |
19851378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 19851239 - 19851312
Alignment:
| Q |
157 |
ctgctaacccctg-tgattgaggtggtctcatgttagcattctattgcgaaggtagatattgcaggttcccaac |
229 |
Q |
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| T |
19851239 |
ctgctaacccctggtgattgaggcggtctcatgttagcaccctgctgagaaggaagataatgctggttcccaac |
19851312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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