View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8985_low_28 (Length: 441)
Name: NF8985_low_28
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 14077528 - 14077689
Alignment:
| Q |
1 |
tatccgtgtctatactttatagagatactgtgaacctaaaaaggtattaagagtaataatagtatcttttgctgttgctttattgatacgaacccttctt |
100 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14077528 |
tatccgtgtatgtgctttatagagatactgtgaacctaaaaaggtattaagagtaataatagtatctttcgctgttgctttattgatacgaacccttctt |
14077627 |
T |
|
| Q |
101 |
atcttagttgtgcagttttgcactctttcagccagataaaatgtttcttcctgtgacattaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14077628 |
atcttagttgtgcagttttgcactctttcagccaaataaaatgtttcttcctgtgacattaa |
14077689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 14387556 - 14387717
Alignment:
| Q |
1 |
tatccgtgtctatactttatagagatactgtgaacctaaaaaggtattaagagtaataatagtatcttttgctgttgctttattgatacgaacccttctt |
100 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14387556 |
tatccgtgtatgtgctttatagagatactgtgaacctaaaaaggtattaagagtaataatagtatctttcgctgttgctttattgatacgaacccttctt |
14387655 |
T |
|
| Q |
101 |
atcttagttgtgcagttttgcactctttcagccagataaaatgtttcttcctgtgacattaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14387656 |
atcttagttgtgcagttttgcactctttcagccaaataaaatgtttcttcctgtgacattaa |
14387717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University