View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8985_low_30 (Length: 423)
Name: NF8985_low_30
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_30 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Complemental strand, 6627141 - 6626721
Alignment:
| Q |
7 |
ttggtgttggttctcttcccgttggatttaaaatgcgcaggtaattcattttgaggattttgttaggttaagttaattagacaatggactttcannnnnn |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6627141 |
ttggtgttggttctcttcccgttggatttaaaatgcgcaggtaattcattttgaggattttgttaggttaagttaattagacaatggactttcatttttt |
6627042 |
T |
|
| Q |
107 |
nna----aaattattaatgtcatcaaactcatattagttatcaatgattatgttagaactactccaatgaagggtattaaattgttgtggcccagtacgc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6627041 |
tttttttaaattattaatgtcatcaaactcatattagttatcaatgattatgttagaactactccaatgaagggtattaaattgttgtggcccagtacgc |
6626942 |
T |
|
| Q |
203 |
ccgcccaagttggggcgcactaggccaccgcgacgtagatgcctttcaaatacagagttcttaagagttgtaccattgaagtaaatgagagtgagttgct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6626941 |
ccgcccaagttggggcgcactaggccaccgcgacgtagatgcctttcaaatacagagttcttaagagttgtaccattgaagtaaatgagagtgagttgct |
6626842 |
T |
|
| Q |
303 |
caaaaaagatatgtaaaaatagtccttttgattaatgaggattttcttgcagcatgttctgacctctaaattccatgtacagtgtttttgcaagcaaaga |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6626841 |
caaaaaagatatgtaaaaatagtccttttgattaatgaggattttcttgcagcatgttctgacctctaaattccatgtacagtgtttttgcaagcaaaga |
6626742 |
T |
|
| Q |
403 |
gacaagaaggaatgcagagaa |
423 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
6626741 |
gacgagaaggaatgcagagaa |
6626721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University