View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8985_low_32 (Length: 392)
Name: NF8985_low_32
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 36885038 - 36884680
Alignment:
| Q |
18 |
actacttgttgcaatccgtttgaacaaactgcatcctcaaagccagaacttgaattactcagaaagcaaggatatctctttgcattctcatccaaccagt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36885038 |
actacttgttgcaatccgtttgaacaaactgcatcctcaaagccagaacttgaattactcagaaagcaaggatatctctttgcattctcatccaaccagt |
36884939 |
T |
|
| Q |
118 |
gcaagcataggtaatttatacagagaagcatatggatagtgaggcactctataatctgtttttgtcatttttgctgagaagaccttgataaaatcttgaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36884938 |
gcaagcataggtaatttatacagagaagcatatggatagtaaggcactctataatctgtttttgtcatttttgctgagaagaccttgataaaatcttgaa |
36884839 |
T |
|
| Q |
218 |
aaataatacgaatttgagattgtattggaaattcacnnnnnnngtgtaataatcaactagctacctcactgagttaggatgccattaatatttctgtgaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36884838 |
aaataatacgaatttgagattgtatttgaaattcactttttttgtgtaataatcaactagctacctcactgagttaggatgccattaatatttctgtgaa |
36884739 |
T |
|
| Q |
318 |
ttcatttctaatgctaatcatgctctcnnnnnnncttcctattggtgatagaggtctct |
376 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
36884738 |
ttcatttctaatgctaatcatgctatctttttttcttcctattggtgatagaggtctct |
36884680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University