View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8985_low_33 (Length: 388)

Name: NF8985_low_33
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8985_low_33
NF8985_low_33
[»] chr7 (8 HSPs)
chr7 (1-286)||(42966314-42966598)
chr7 (283-374)||(42966197-42966288)
chr7 (22-83)||(29508771-29508832)
chr7 (22-86)||(35712547-35712611)
chr7 (22-69)||(6843052-6843099)
chr7 (22-92)||(20647365-20647435)
chr7 (22-70)||(9231213-9231261)
chr7 (22-71)||(7605010-7605059)
[»] chr2 (5 HSPs)
chr2 (26-180)||(5535276-5535430)
chr2 (22-160)||(22884290-22884428)
chr2 (22-180)||(19813555-19813714)
chr2 (22-85)||(30960660-30960723)
chr2 (22-71)||(7647785-7647834)
[»] chr3 (2 HSPs)
chr3 (22-180)||(10280037-10280195)
chr3 (37-180)||(44030897-44031041)
[»] scaffold0496 (1 HSPs)
scaffold0496 (24-180)||(7905-8061)
[»] chr1 (2 HSPs)
chr1 (22-86)||(13058192-13058256)
chr1 (22-163)||(6946650-6946791)
[»] scaffold0054 (1 HSPs)
scaffold0054 (37-167)||(58993-59123)
[»] chr8 (2 HSPs)
chr8 (194-229)||(18171691-18171726)
chr8 (22-71)||(22935691-22935740)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 42966598 - 42966314
Alignment:
Q  1 tgttcttccgacgtgcaagcctcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgct 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  42966598 tgttcttccgacgtgaaagcctcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttagaattgactagggtttaatcggacgtgct 42966499  T
Q  101 gttgttttttattgtatttcacattagaattcatgcacttgaattcactggatcaggttttatatccaccagtttttatgnnnnnnnnaaataatatgta 200  Q
    | ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         |||||||||||    
T  42966498 gctgttttttattgtattttacgttagaattcatgcacttgaattcactggatcaggttttatatcccccagtttttatgtttttttt-aataatatgta 42966400  T
Q  201 cctttttgcaattttcttatcatcatcaacaacaagaagaaaattttcatgtacctctcaagttccttaatgaggcttatagacca 286  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  42966399 cctttttgcaattttcttatcatcatcaacaacaacaagaaatttttcatgtacctctcaagttccttaatgaggcttatcgacca 42966314  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 283 - 374
Target Start/End: Complemental strand, 42966288 - 42966197
Alignment:
Q  283 accatgctttggataacacttttgagaagtttcagtctacctacaaagtaagcagtaaggccttccatgaagcaagcttcaccttgattttg 374  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  42966288 accatgctttgcataacacttttgagaagtttcagtctacctacaaagtaagtagtgaggccttccatgaagcaagcttcaccttgattttg 42966197  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 29508832 - 29508771
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagg 83  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  29508832 tcattcaccaacttatagatccggttggtgctggcaaacatcgtttgttaaagttgactagg 29508771  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 35712611 - 35712547
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtt 86  Q
    |||||||||||||||||| || ||||||||||| |||||||||||||||| |||||| |||||||    
T  35712611 tcattcgccaacttataggcctggttggtgctcacaaacatcgtttgttagaattgattagggtt 35712547  T

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Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 69
Target Start/End: Complemental strand, 6843099 - 6843052
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgt 69  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6843099 tcattcgccaacttatagacctggttggtgctcgcaaacatcgtttgt 6843052  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 20647435 - 20647365
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcg 92  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||   || ||||||||| |||||    
T  20647435 tcattcgccaacttatagacccagttggtgctcacaaacatcgtttgttagtcttaactagggttgaatcg 20647365  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 9231261 - 9231213
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgtt 70  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  9231261 tcattcaccaacttatagacccagttggtgctcgcaaacatcgtttgtt 9231213  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 7605010 - 7605059
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgtta 71  Q
    ||||||| ||| |||||||||  ||||||||| |||||||||||||||||    
T  7605010 tcattcgtcaaattatagacctagttggtgcttgcaaacatcgtttgtta 7605059  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 5535430 - 5535276
Alignment:
Q  26 tcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttcacatt 125  Q
    ||||||||||| |||| |||||| |||||||||||||||||||||| |||||||||||||| ||| | |  || ||||||| ||  ||||||||| | ||    
T  5535430 tcgccaacttaaagacacggttgatgctcgcaaacatcgtttgttagaattgactagggttgaattgagtatgttgttgttattggttgtatttctcgtt 5535331  T
Q  126 agaattcatgcacttgaattcactggatcaggttttatatccaccagtttttatg 180  Q
    ||  |||||||||||||||||| ||| ||||||||||| ||| ||| ||||||||    
T  5535330 agggttcatgcacttgaattcattgggtcaggttttatgtcccccattttttatg 5535276  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 22884290 - 22884428
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttca 121  Q
    |||||| ||||||||||| |||| |||||||||||||||||||||||||| | ||||||| |||| ||||| | ||| ||||||| ||  |||||||| |    
T  22884290 tcattcaccaacttataggcccgattggtgctcgcaaacatcgtttgttagacttgactaaggttgaatcgagtgtgttgttgttgttggttgtatttta 22884389  T
Q  122 cattagaattcatgcacttgaattcactggatcaggttt 160  Q
      ||||  || || |||||| ||||||||| | ||||||    
T  22884390 tgttagggttgattcacttggattcactgggttaggttt 22884428  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 180
Target Start/End: Original strand, 19813555 - 19813714
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttca 121  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||| | |||  ||||||| ||| | | ||  ||   || ||  |||||||||     
T  19813555 tcattcgccaacatatagaccgagttggtgctcgcaaacatcgtttgttatagttgtttagggttgaatagagtgtattgcaattattggttgtatttcc 19813654  T
Q  122 cattagaattcatgcacttgaattcactggatcaggttttatatccac-cagtttttatg 180  Q
    | ||||  |||||||||||| ||||||||| ||||||||||| ||| | |||||||||||    
T  19813655 ctttagggttcatgcacttggattcactgggtcaggttttatgtccccgcagtttttatg 19813714  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 30960723 - 30960660
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggt 85  Q
    ||||||||| ||||||||||||| |||||| |||||||||||||| ||||   |||||||||||    
T  30960723 tcattcgccgacttatagacccgattggtgttcgcaaacatcgttcgttagccttgactagggt 30960660  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 7647785 - 7647834
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgtta 71  Q
    |||||||||||||||||| ||  |||||||||| ||||||| ||||||||    
T  7647785 tcattcgccaacttataggcctagttggtgctcacaaacattgtttgtta 7647834  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 10280195 - 10280037
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttca 121  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||||||| ||||||||||| || ||||| |  ||||| |||| ||  |||||||||     
T  10280195 tcattcgccaacttatagacttggttggtgctcgcaatcatcgtttgttagaattgactaggattgaatcgagtatgctgctgttattggttgtatttcc 10280096  T
Q  122 cattagaattcatgcacttgaattcactggatcaggttttatatccaccagtttttatg 180  Q
    | || |  |||||||||||||||||||||| |||| |||||| ||| | | ||||||||    
T  10280095 cgtttgggttcatgcacttgaattcactgggtcagattttatgtcccctaatttttatg 10280037  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 44031041 - 44030897
Alignment:
Q  37 tagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttcacattagaattcatgc 136  Q
    ||||| ||||||||||| ||||||||||||||||| | |||||||||||  ||||  | ||  ||||||| ||  ||||||||| ||||||  || |  |    
T  44031041 tagactcggttggtgctggcaaacatcgtttgttagagttgactagggtagaatcaagtgtattgttgttcttggttgtatttctcattagggttgacac 44030942  T
Q  137 acttgaattcactggatcaggttttatat-ccaccagtttttatg 180  Q
    ||||| ||||||| | ||||||||||| | || ||||||||||||    
T  44030941 acttggattcactaggtcaggttttatgtccccccagtttttatg 44030897  T

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Target: scaffold0496 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 7905 - 8061
Alignment:
Q  24 attcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttcaca 123  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| | | |||||||||||| ||||| | ||  | ||||| ||  ||||||||  ||    
T  7905 attcgccaacttatagacccggttggtgctcacaaacattgtttgtaagacttgactagggttgaatcgagtgtattattgttattggttgtattttcca 8004  T
Q  124 ttagaattcatgcacttgaattcactggatcaggttttatatccaccagtttttatg 180  Q
    ||||  ||||| |||||| || || ||| ||||||||||||||| | ||||||||||    
T  8005 ttagggttcattcacttggatgcattgggtcaggttttatatcccctagtttttatg 8061  T

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Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 13058256 - 13058192
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtt 86  Q
    ||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||    
T  13058256 tcattagccaacttatagacctggttggtgctcgcaagcatcgtttgttagaattgactagggtt 13058192  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 6946791 - 6946650
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttca 121  Q
    |||||| ||| ||||||||||||||| ||||| | ||||||| ||||||| | |||||||||||  ||||| | ||  |||||||  | ||||||||||     
T  6946791 tcattcaccagcttatagacccggttcgtgctggtaaacatcatttgttagagttgactagggtagaatcgagtgtattgttgttcctgattgtatttcc 6946692  T
Q  122 cattagaattcatgcacttgaattcactggatcaggttttat 163  Q
    ||||||  || |  |||| | ||||||||| |||||||||||    
T  6946691 cattagggttgacacactcggattcactgggtcaggttttat 6946650  T

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Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 59123 - 58993
Alignment:
Q  37 tagacccggttggtgctcgcaaacatcgtttgttaaaattgactagggtttaatcgggcgtgctgttgttttttattgtatttcacattagaattcatgc 136  Q
    |||||| |||||||||| ||||||||||||||||| | |||||||||||  ||||| | ||  ||||||| ||  ||||||||| ||||||  || |  |    
T  59123 tagacctggttggtgctggcaaacatcgtttgttagagttgactagggtagaatcgtgtgtattgttgttcttggttgtatttcccattagggttgacac 59024  T
Q  137 acttgaattcactggatcaggttttatatcc 167  Q
    ||||| ||||||||| | || ||||||||||    
T  59023 acttggattcactgggtgagattttatatcc 58993  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 18171691 - 18171726
Alignment:
Q  194 atatgtacctttttgcaattttcttatcatcatcaa 229  Q
    ||||||||||||||||||||||||||| ||||||||    
T  18171691 atatgtacctttttgcaattttcttatgatcatcaa 18171726  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 22935691 - 22935740
Alignment:
Q  22 tcattcgccaacttatagacccggttggtgctcgcaaacatcgtttgtta 71  Q
    |||||||||||||||||| ||  |||||||||| ||||||| ||||||||    
T  22935691 tcattcgccaacttataggcctagttggtgctcacaaacattgtttgtta 22935740  T

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