View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8985_low_36 (Length: 356)

Name: NF8985_low_36
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8985_low_36
NF8985_low_36
[»] chr1 (7 HSPs)
chr1 (22-347)||(27093704-27094029)
chr1 (25-127)||(27090154-27090256)
chr1 (22-197)||(27080958-27081145)
chr1 (22-100)||(27083659-27083737)
chr1 (248-341)||(27095251-27095341)
chr1 (222-268)||(27083526-27083572)
chr1 (127-164)||(27083584-27083620)
[»] chr2 (2 HSPs)
chr2 (222-285)||(41565891-41565954)
chr2 (127-169)||(41565962-41566004)
[»] chr7 (2 HSPs)
chr7 (222-268)||(38857694-38857740)
chr7 (127-164)||(38857753-38857790)


Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 22 - 347
Target Start/End: Complemental strand, 27094029 - 27093704
Alignment:
Q  22 tcggattacaaccatgagcgaccaagtaaattatcatccacgaatcgctttgaactatcatgtgttttgcttgatagattcaagaagagcttccagtctc 121  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27094029 tcggattacaaccatgagcgaccaagtaaattatgatccacgaatcgctttgaactatcatgtgttttgcttgatagattcaagaagagcttctagtctc 27093930  T
Q  122 caattaaagctttgccacatttgaagatcccaagtttcaagtgaatcttaccactcttcataatggtttcctcatcgccctacaacaactaatttgataa 221  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27093929 caattaaagctttgccacatttgaagattccaagtttcaagtgcatcttaccactcttcataatggtttcctcatcgccctacaacaactaatttgataa 27093830  T
Q  222 cttcatgcctaattgacctatctacgttaaacaacttccaaagcattatgtgtagacatttaggggaaaaaatctcaggttccaaagcttcacctttgaa 321  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27093829 cttcattcctaattgacctatctacgttaaacaacttccaaagcattatgtgtagacatttagggaaaaaaatctcaggttccaaagcttcacctttgaa 27093730  T
Q  322 acatgaagatttgggtgaagaataat 347  Q
    |||||||||||||||||||| |||||    
T  27093729 acatgaagatttgggtgaagcataat 27093704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 27090256 - 27090154
Alignment:
Q  25 gattacaaccatgagcgaccaagtaaattatcatccacgaatcgctttgaactatcatgtgttttgcttgatagattcaagaagagcttccagtctccaa 124  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||||    
T  27090256 gattacaaccataaacgaccaagtaaattatcatccacgaatcgctttgaattatcatatgctttgcttgatagattcaagaagagcttctagtctccaa 27090157  T
Q  125 tta 127  Q
    |||    
T  27090156 tta 27090154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 197
Target Start/End: Complemental strand, 27081145 - 27080958
Alignment:
Q  22 tcggattacaaccatgagcgaccaagtaaattatcatccacgaatcgctttgaactatcatgtgttttgcttgatagattcaaga-------agagcttc 114  Q
    ||||||||||||| || | |||||||| ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||       ||||||||    
T  27081145 tcggattacaaccttgggtgaccaagtgaattatcatccacgaatcgctctgaactatcatatgctttgcttgatagattcaagaaatcttgagagcttc 27081046  T
Q  115 cagtctcc-aattaaagctttgccacatttgaagatcccaagtttcaagtgaatct----taccactcttcataatggtttcctcatc 197  Q
     || |||| ||||||||||||||||||||||||| ||||||||||||| || || |    ||||||| | ||||||||||||||||||    
T  27081045 tagcctccaaattaaagctttgccacatttgaaggtcccaagtttcaattgcatttcatataccactatccataatggtttcctcatc 27080958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 27083737 - 27083659
Alignment:
Q  22 tcggattacaaccatgagcgaccaagtaaattatcatccacgaatcgctttgaactatcatgtgttttgcttgatagat 100  Q
    ||||||||||||| || | |||||||| |||||||||||| |||||||| |||| | |||| || ||||||||||||||    
T  27083737 tcggattacaaccttgggtgaccaagtgaattatcatccatgaatcgctctgaaatttcatatgctttgcttgatagat 27083659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 248 - 341
Target Start/End: Complemental strand, 27095341 - 27095251
Alignment:
Q  248 ttaaacaacttccaaagcattatgtgtagacatttagg-ggaaaaaa--tctcaggttccaaagcttcacctttgaaacatgaagatttgggtgaag 341  Q
    ||||||||||||||||||||| ||| |||||||||||  ||||||||  ||||||||||      |||||||||||| |||||||||||||||||||    
T  27095341 ttaaacaacttccaaagcattctgtatagacatttagaaggaaaaaaattctcaggttc------ttcacctttgaagcatgaagatttgggtgaag 27095251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 27083572 - 27083526
Alignment:
Q  222 cttcatgcctaattgacctatctacgttaaacaacttccaaagcatt 268  Q
    ||||||||||||||| || |||||  |||||||||||||||||||||    
T  27083572 cttcatgcctaattgtcccatctaaattaaacaacttccaaagcatt 27083526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 27083620 - 27083584
Alignment:
Q  127 aaagctttgccacatttgaagatcccaagtttcaagtg 164  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  27083620 aaagctttgccacatttgaagat-ccaagtttcaagtg 27083584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 285
Target Start/End: Complemental strand, 41565954 - 41565891
Alignment:
Q  222 cttcatgcctaattgacctatctacgttaaacaacttccaaagcattatgtgtagacatttagg 285  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |   ||||||||||||    
T  41565954 cttcatgcctaattgacccatctacattaaacaacttccaaagcattctaactagacatttagg 41565891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 41566004 - 41565962
Alignment:
Q  127 aaagctttgccacatttgaagatcccaagtttcaagtgaatct 169  Q
    |||||||||||| ||||||||||||||||||||||||| ||||    
T  41566004 aaagctttgccatatttgaagatcccaagtttcaagtgcatct 41565962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 268
Target Start/End: Complemental strand, 38857740 - 38857694
Alignment:
Q  222 cttcatgcctaattgacctatctacgttaaacaacttccaaagcatt 268  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||    
T  38857740 cttcatgcctaattgacccatctacattaaacaacttccaaagcatt 38857694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 127 - 164
Target Start/End: Complemental strand, 38857790 - 38857753
Alignment:
Q  127 aaagctttgccacatttgaagatcccaagtttcaagtg 164  Q
    |||||||||||| |||||||||||||||||||||||||    
T  38857790 aaagctttgccatatttgaagatcccaagtttcaagtg 38857753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University