View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_40 (Length: 350)
Name: NF8985_low_40
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 25 - 333
Target Start/End: Original strand, 6314725 - 6315033
Alignment:
| Q |
25 |
caggggactctgttttgaacgaaaacataacattacaataccttagattttgtcgattttcacggtaaaaggaaagagacttgttagagataacatcagg |
124 |
Q |
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| T |
6314725 |
caggggactctgttttgaacgaaaacataacattacaataccttagattttgtcgattttcacggtaaaaggaaagagacttgttagagataacatcagg |
6314824 |
T |
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| Q |
125 |
gttggtattaagaaggatatattcaacccaaccaacatcaccatttgaaccaattctcttacttccataaccaaaaggatcaggaggaccagctctgtct |
224 |
Q |
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| T |
6314825 |
gttagtattaagaaggatatattcaacccaaccaacatcaccatttgaaccaattctcttacttccataaccaaaaggatcaggaggaccagctctgtct |
6314924 |
T |
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| Q |
225 |
ttctcagactgtggttttttgaaaaaccttagtgcttcattttccaaattggacataaattccaaaggaacaccatggttcaccactttgaagaatccaa |
324 |
Q |
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| T |
6314925 |
ttctcagactgtggttttttgaaaaaccttagtgcttcattttccaaattggacataaattccaaaggaacaccatggttcaccactttgaagaatccaa |
6315024 |
T |
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| Q |
325 |
attccttac |
333 |
Q |
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| T |
6315025 |
attccttac |
6315033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 38543477 - 38543345
Alignment:
| Q |
97 |
aaagagacttgttagagataacatcagggttggtattaagaaggatatattcaacccaaccaacatcaccatttgaaccaattctcttacttccataacc |
196 |
Q |
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| T |
38543477 |
aaagagacttgagagagatgacatctgggttagtattaagaagaagatattcaacccaacccacatcaccgtttgtaccaataattttgcttccataccc |
38543378 |
T |
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| Q |
197 |
aaaaggatcaggaggaccagctctgtctttctc |
229 |
Q |
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| T |
38543377 |
aaaaggatcaggtggacctgctttctctttctc |
38543345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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