View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8985_low_43 (Length: 321)

Name: NF8985_low_43
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8985_low_43
NF8985_low_43
[»] chr4 (9 HSPs)
chr4 (18-321)||(8566821-8567133)
chr4 (102-319)||(8557159-8557374)
chr4 (102-319)||(8594237-8594446)
chr4 (102-247)||(8646532-8646672)
chr4 (17-244)||(8611896-8612115)
chr4 (17-66)||(8555572-8555621)
chr4 (17-66)||(8557111-8557160)
chr4 (17-71)||(8646702-8646754)
chr4 (17-71)||(8594476-8594528)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 8567133 - 8566821
Alignment:
Q  18 aagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacacttcatnnnnnnnnnn-ctcannnnnnngttcccagtacagttagttggcat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||       ||||||||||||||||||||||||    
T  8567133 aagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacacttcataaaaaaaaaaactcatttttttgttcccagtacagttagttggcat 8567034  T
Q  117 tttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaataggagagggaaggaagggtagagaagaagattagcaaaaag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  8567033 tttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaataggagagggaaggaagggtagagaagaatagtagcaaaaag 8566934  T
Q  217 aacaacagttgttcatctaaaacaccacatcgat--------nnnnnnnnngactccaccacttaaattgtggatcctccttgtttagccgcgcaccgcc 308  Q
    ||||||||||||||||||||||||||||||||||                 ||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  8566933 aacaacagttgttcatctaaaacaccacatcgataaaaaaaaaaaaacagagactccaccgcttaaattgtggatcctccttgtttagccgcacaccgcc 8566834  T
Q  309 accgtcaaagaat 321  Q
    |||||||||||||    
T  8566833 accgtcaaagaat 8566821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 102 - 319
Target Start/End: Original strand, 8557159 - 8557374
Alignment:
Q  102 acagttagttggcattttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaataggagagggaaggaagggtagagaag 201  Q
    ||||||||||||||||||||||||||| ||||||||||  ||||||||| ||||||   ||   |||||||||||||||||| |||||||||||||||||    
T  8557159 acagttagttggcattttcttcataaatatgtggcata--aactctagaattctactgatat--atataaaaataggagaggcaaggaagggtagagaag 8557254  T
Q  202 aagattagcaaaaagaacaacagttgttcatctaaaacaccacatcgatnnnnnnnnnga--ctccaccacttaaattgtggatcctccttgtttagccg 299  Q
    |||| ||||||||||||  ||| || ||| ||| |||||||||||| ||          |  ||| |||||||||| ||   ||||||||||||||||||    
T  8557255 aagagtagcaaaaagaatcacacttattcctctcaaacaccacatcaataaaaaaaaaaaaactctaccacttaaactgccaatcctccttgtttagccg 8557354  T
Q  300 cgcaccgccaccgtcaaaga 319  Q
    |||||| |||| ||||||||    
T  8557355 cgcaccaccacagtcaaaga 8557374  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 319
Target Start/End: Complemental strand, 8594446 - 8594237
Alignment:
Q  102 acagttagttggcattttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaataggagagggaaggaagggtagagaag 201  Q
    ||||||||||||||||||||||||||||| ||||||||  |||| |||||||||||   ||    ||||||||||||||||| ||||| |||||||||||    
T  8594446 acagttagttggcattttcttcataaaaaagtggcata--aactttagacttctactgata----tataaaaataggagaggcaaggatgggtagagaag 8594353  T
Q  202 aagattagcaaaaagaacaacagttgttcatctaaaacaccacatcgatnnnnnnnnngactccaccacttaaattgtggatcctccttgtttagccgcg 301  Q
    |||| || ||||| ||| |||| |||||| ||| |||||||||||| ||          |||| || ||||||| ||   ||||||||||||||||||||    
T  8594352 aagagtaacaaaatgaataacacttgttcctctcaaacaccacatcaatgaaaaaaa--actctacgacttaaactgccaatcctccttgtttagccgcg 8594255  T
Q  302 caccgccaccgtcaaaga 319  Q
    |||| |||| ||||||||    
T  8594254 caccaccacagtcaaaga 8594237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 8646672 - 8646532
Alignment:
Q  102 acagttagttggcattttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaa-taggagagggaaggaagggtagagaa 200  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    |    ||||||||| ||||||| | ||||||||||||||||    
T  8646672 acagttagttggcattttcttcataaaaatgtggc--ataaactctagacttcta----ttgatatataaaaattaggagaagcaaggaagggtagagaa 8646579  T
Q  201 gaagattagcaaaaagaacaacagttgttcatctaaaacaccacatc 247  Q
    ||| | |||||||||||| |||| |||||| | | ||||||||||||    
T  8646578 gaatagtagcaaaaagaataacacttgttcctttcaaacaccacatc 8646532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 8611896 - 8612115
Alignment:
Q  17 caagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacacttcatnnnnnnnnnnctcannnnnnngttcccagt--acagttagttggc 114  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||          | ||       |||| ||||  |||||||||||||    
T  8611896 caagaaaatcatgcctatcacatgtttt--gctcgcaaccaaacaaacacttcat---gaaaaaacacattttttggttctcagtacacagttagttggc 8611990  T
Q  115 attttcttcataaaaatgtggcatataaactctagacttctacatctactgatataaaaa-taggagagggaaggaagggtagagaagaagattagcaaa 213  Q
    ||||||||||||||||||||||   |||||||||||||||||    |    ||||||||| ||||||||| ||||||||||||||||||| | |||||||    
T  8611991 attttcttcataaaaatgtggc--ctaaactctagacttcta----ttgatatataaaaattaggagaggcaaggaagggtagagaagaatagtagcaaa 8612084  T
Q  214 aagaacaacagttgttcatctaaaacaccac 244  Q
    ||||| |||| |||||| | | |||||||||    
T  8612085 aagaataacacttgttcctttcaaacaccac 8612115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 8555621 - 8555572
Alignment:
Q  17 caagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacac 66  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  8555621 caagaatatcatgcctatcacatgtcttctgctcgcaaccaaacaaacac 8555572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 8557111 - 8557160
Alignment:
Q  17 caagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacac 66  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  8557111 caagaaaataatgcctatcacatgtcttctgctcgcaaccaaacaaacac 8557160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 8646754 - 8646702
Alignment:
Q  17 caagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacacttcat 71  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  8646754 caagaaaatcatgcctatcacatgtttt--gctcgcaaccaaacaaacacttcat 8646702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 8594528 - 8594476
Alignment:
Q  17 caagaaaatcatgcctatcacatgtgttctgctcgcaaccaaacaaacacttcat 71  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||| |||    
T  8594528 caagaaaatcatgcctatcaca--tgttttgctcgcaaccaaacaaacactgcat 8594476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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