View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_45 (Length: 301)
Name: NF8985_low_45
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 5 - 296
Target Start/End: Original strand, 3565332 - 3565628
Alignment:
| Q |
5 |
agtcccggaatctaagtcctggttatttgaaattgtttccttggactcaagattttaacctaaagttacaaaataactcatctgctcaagtttgggttat |
104 |
Q |
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| T |
3565332 |
agtcccggaatctaagtcctggttatttgaaattgtttccttggactcaagattttaacctaaagttacaaaataactcatctgctcaagtttggggtat |
3565431 |
T |
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| Q |
105 |
aatctctagagg-----aagaatactggaggaagaacattttattctcaatagctagtggtgctggttcgccaattttcactgattctgccacaaccaaa |
199 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
3565432 |
aatctctggtcttgcacaagaatactggaggaagaacattttattctcaatagctagtggtgctggttcgccaattttcactgattctaccacagccaaa |
3565531 |
T |
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| Q |
200 |
cttatctatgaaagaacctttggatattaggctagagtcttagtagatcttgatatttcccaacctttaagacacaaaatgttagttgaaagaaaag |
296 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3565532 |
cttatgtatgaaagaacctttggatattaggctagagtcttagtagatcttgatatttcccaacctttaagacacaaaatgttagttgaaagaaaag |
3565628 |
T |
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