View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8985_low_53 (Length: 272)
Name: NF8985_low_53
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_53 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 33050406 - 33050653
Alignment:
| Q |
19 |
gatacatgatgctcaaattacataacaggttaaaagtcttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
118 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
33050406 |
gatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataatagtatcg |
33050505 |
T |
|
| Q |
119 |
attatgttgaaggaaatggtaatgtgttgattcatagtagtttacttgtaacattaacaactcgataaatgttattgattctcttcgatttctcccaaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
33050506 |
attatgttgaaggaaatggtaatgtgttgattcatagtagtttacttgtaacattaacaactcaataaaagtttttgattctcttcgatttctcccaaac |
33050605 |
T |
|
| Q |
219 |
catattcttttcaaattttcccaatttcctttttgttctaacaccaaa |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33050606 |
catattcttttcaaattttcccaatttcctttttgttctaacaccaaa |
33050653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 5313561 - 5313698
Alignment:
| Q |
19 |
gatacatgatgctcaaattacataacaggttaaaa-gtcttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtata |
117 |
Q |
| |
|
|||||| ||||||||||| | || |||||| |||| |||||||| |||| | |||||| |||||||| || ||||| |||||||| | ||||||||||| |
|
|
| T |
5313561 |
gatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataatagtata |
5313660 |
T |
|
| Q |
118 |
gattatgttgaaggaaatggtaatgtgttgattcatag |
155 |
Q |
| |
|
| || |||| |||||| | |||| || ||||||||||| |
|
|
| T |
5313661 |
gtttgtgttaaaggaactagtaaagtattgattcatag |
5313698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 45495828 - 45495767
Alignment:
| Q |
57 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
118 |
Q |
| |
|
||||| |||| |||||||| ||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
45495828 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45495767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 45503570 - 45503509
Alignment:
| Q |
57 |
ttggtactctaaattagattattcaattaatagaaagataagatttgtagataatagtatag |
118 |
Q |
| |
|
||||| |||| |||||||| ||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
45503570 |
ttggttctctgaattagatgattcagttaatagaaaaataagatttgtagacaatagtatag |
45503509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University