View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_57 (Length: 249)
Name: NF8985_low_57
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11493552 - 11493785
Alignment:
| Q |
1 |
tcatcttggtataagatagtaatgcagctcatgtcagtgtgcattccaagtccttcaactttatcttctaaatccaaaatttctggtgatgtatagttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
11493552 |
tcatcttggtataagatagtaatgcagctcatgtcagtgtgcattccaagtccttcaacttgatcttccaaatccaaaatttctggtgatgtatagttgt |
11493651 |
T |
|
| Q |
101 |
ttattcttaagtaaccttgacattttttgaattctgaatcataaaatagcttcgcaaatccttctcctaagctcattaacacaagatttaaaattctttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11493652 |
ttattcttaagtaaccttgacattttttgaattctgaatcataaaatagcttctcaaatccttctcctaagctcattaacacaagctttaaaattctttc |
11493751 |
T |
|
| Q |
201 |
tgataaatctgccatcttgctacaatagttctct |
234 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
11493752 |
tgataaatctgccatcttgctacaatagttctct |
11493785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 76 - 234
Target Start/End: Complemental strand, 9427852 - 9427694
Alignment:
| Q |
76 |
aaaatttctggtgatgtatagttgtttattcttaagtaaccttgacattttttgaattctgaatcataaaatagcttcgcaaatccttctcctaagctca |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||||||||| |
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| T |
9427852 |
aaaatttctggtgatgtatagttgtttattcttaagtaaccttgatattttttgaatttaaaatcataaaataatttctcaaatccttctcctaagctca |
9427753 |
T |
|
| Q |
176 |
ttaacacaagatttaaaattctttctgataaatctgccatcttgctacaatagttctct |
234 |
Q |
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|||||| || ||||||||||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
9427752 |
ttaacataaactttaaaattctttctaataaatctgtcatcttactacaatagttctct |
9427694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 80 - 232
Target Start/End: Original strand, 1035052 - 1035204
Alignment:
| Q |
80 |
tttctggtgatgtatagttgtttattcttaagtaaccttgacattttttgaattctgaatcataaaatagcttcgcaaatccttctcctaagctcattaa |
179 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||| |
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| T |
1035052 |
tttctggtgatgtatagttgtttattcttaagtaaccttgacattttttgaatttagaatcataaaataatttctcgaatccttctcctaagctcattaa |
1035151 |
T |
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| Q |
180 |
cacaagatttaaaattctttctgataaatctgccatcttgctacaatagttct |
232 |
Q |
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|| || |||||||||||||||||||||| || |||||| ||||||||||||| |
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| T |
1035152 |
cataaactttaaaattctttctgataaatatgtcatcttactacaatagttct |
1035204 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 87 - 217
Target Start/End: Original strand, 42518983 - 42519113
Alignment:
| Q |
87 |
tgatgtatagttgtttattcttaagtaaccttgacattttttgaattctgaatcataaaatagcttcgcaaatccttctcctaagctcattaacacaaga |
186 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||| ||| ||||||||||||||||||||| |
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| T |
42518983 |
tgatgtatagttgtttattcttaagtaaccttgacattttttgaattcagaattataaaattgcttctcaaattcttatcctaagctcattaacacaagc |
42519082 |
T |
|
| Q |
187 |
tttaaaattctttctgataaatctgccatct |
217 |
Q |
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||||||||||||| |||||||||| ||||| |
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| T |
42519083 |
tttaaaattctttacgataaatctgtcatct |
42519113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 36450873 - 36450947
Alignment:
| Q |
123 |
ttttttgaattctgaatcataaaatagcttcgcaaatccttctcctaagctcattaacacaagatttaaaattct |
197 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36450873 |
ttttttgaattcagaatcataaaatagcttctcaaatccttctcctaagctcattaacacaagctttaaaattct |
36450947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 25970702 - 25970628
Alignment:
| Q |
123 |
ttttttgaattctgaatcataaaatagcttcgcaaatccttctcctaagctcattaacacaagatttaaaattct |
197 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
25970702 |
ttttttgaattcagaatcataaaatagcttctcaaatccttctcctaaactcattaacacaagctttaaaattct |
25970628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 47334799 - 47334725
Alignment:
| Q |
123 |
ttttttgaattctgaatcataaaatagcttcgcaaatccttctcctaagctcattaacacaagatttaaaattct |
197 |
Q |
| |
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|||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47334799 |
ttttttgaattcagaatcataaaataacttctcaaatccttctcctaagctcattaacacaagctttaaaattct |
47334725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29290793 - 29290729
Alignment:
| Q |
1 |
tcatcttggtataagatagtaatgcagctcatgtcagtgtgcattccaagtccttcaactttatc |
65 |
Q |
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|||||||| || || |||||||| || ||||||||||||||||||||||| |||||||||||||| |
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| T |
29290793 |
tcatcttgatacaaaatagtaatacaactcatgtcagtgtgcattccaagcccttcaactttatc |
29290729 |
T |
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