View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_6 (Length: 788)
Name: NF8985_low_6
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 18 - 773
Target Start/End: Original strand, 44046306 - 44047062
Alignment:
| Q |
18 |
taattaagagaggaactttgtaggttatttaatcccatcggttttatgttatcaaaccttcactaattggnnnnnnnggttgctaagttgtagctatgtt |
117 |
Q |
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| T |
44046306 |
taattaagagaggaactttgtaggttatttaatcccatcggttttatgttatcaaaccttcactaattggtttttttggttgctaagttgtagctatgtt |
44046405 |
T |
|
| Q |
118 |
tggatgtctaaattaatatcaaaacaacttaggaggataaataactcaatttannnnnnn-cccttaggttccctcctggttcggagttaatcccatttg |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44046406 |
tggatgtctaaattaacatcaaaacaacttaggaggataaataactcaatttattttttttcccttaggttccctcctggttcggagttaatcccatttg |
44046505 |
T |
|
| Q |
217 |
agtcgtgtaggacactaaatatggatacttctttcaactaaaattcaaactttaatttgtcattttgcgggagtctagcccttttcgctagatcaaactc |
316 |
Q |
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| T |
44046506 |
agtcgtgtaggacactaaatatgaatacttctttcaactaaaattcaaactttaatttgtcactttgcgggagtctagcccttttcgctagatcaaactc |
44046605 |
T |
|
| Q |
317 |
ccatttgtataactcaaaattctatcaagttgaaaaatgtcacaatcacgtcttgcattaagtttatgcatatcatacagtgacagaaattatattatac |
416 |
Q |
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| T |
44046606 |
ccatttgtataactcaaaattctatcaagttgaaaaatgtcacaatcacgtcttgcattaagtttatgcatatcatacagtgacagaaattatattatac |
44046705 |
T |
|
| Q |
417 |
attttaaatatatggttatgaaactgagtggcaccttctcttttgaaaaggaaaccgggaccgtggttgtggactagaccttccagttccactgccacga |
516 |
Q |
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| T |
44046706 |
attttaaatatatggttatgaaactgagtggcaccttctcttttgaaaaggaaaccgggaccgtggttgtggactagacctcccagttccactgccacga |
44046805 |
T |
|
| Q |
517 |
atactgttaatacggaatagagcattgaactttcttaatttttgggcaaatgatttgaagaatttgcgtgcaggatgtgtcttcacaagctcttgcttca |
616 |
Q |
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| T |
44046806 |
atactgttaatacggaatagagcattgaactttcttaatttttgggcaaatgatttgaagaatttgcgtgcaggatgtgtcttcacaagctcttgcttca |
44046905 |
T |
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| Q |
617 |
tagaaacatgatctttctccaaatcattcaacctcattctcattcttgttacttcaagcttcagctctcgattctctcttcttaccgatgcatagttatc |
716 |
Q |
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| T |
44046906 |
tagaaacatgatctttctccaaatcattcaacctcattctcattcttgttacttcaagcttcagctctcgattctctcttcttaccgatgcatagttatc |
44047005 |
T |
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| Q |
717 |
tctaggagaaattgctccacttcctataccactccctgatctttgaggaaattgacc |
773 |
Q |
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| T |
44047006 |
tctaggagaaattgctccacttcctataccactccctgatctttgaggaaattgacc |
44047062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 8e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 565 - 775
Target Start/End: Complemental strand, 39825131 - 39824921
Alignment:
| Q |
565 |
aatgatttgaagaatttgcgtgcaggatgtgtcttcacaagctcttgcttcatagaaacatgatctttctccaaatcattcaacctcattctcattcttg |
664 |
Q |
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||||||||||||| ||| |||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
39825131 |
aatgatttgaagagtttattagcaggatgagacttaacaagctcttgtttcatagaaacatgatctttctccaaatcagtgagtctcattctcattcttg |
39825032 |
T |
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| Q |
665 |
ttacttcaagcttcagctctcgattctctcttcttaccgatgcatagttatctctaggagaaattgctccacttcctataccactccctgatctttgagg |
764 |
Q |
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| T |
39825031 |
ttacttcgagtttcagctcacggttctctcttctaactgatgcatagttatctctaggtgacattgctccacttcctgcaccactgcctgaacgttgagg |
39824932 |
T |
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| Q |
765 |
aaattgaccgt |
775 |
Q |
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| T |
39824931 |
gaattgaccgt |
39824921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 10436496 - 10436422
Alignment:
| Q |
226 |
ggacactaaatatggatacttctttcaactaaaattcaaactttaatttgtcattttgcgggagtctagcccttt |
300 |
Q |
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||||| ||||||| ||||||||||||| | |||||| |||||||||| ||||| ||| |||||| |||| |||| |
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| T |
10436496 |
ggacattaaatatagatacttctttcagccaaaatttgaactttaattcgtcatgttgtgggagtttagctcttt |
10436422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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