View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8985_low_63 (Length: 215)
Name: NF8985_low_63
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_63 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 37841532 - 37841351
Alignment:
| Q |
19 |
caaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttga |
118 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841532 |
caaaacagatgcactactattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttga |
37841433 |
T |
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| Q |
119 |
ggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgccgtctctg |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37841432 |
ggagattgagtttcatgtcttctcccaactataaaaaaatcatgttcattcattatctcacgtagaaaagatgccgtttctg |
37841351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 38380727 - 38380900
Alignment:
| Q |
19 |
caaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttga |
118 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
38380727 |
caaaacagatgcactactattaagatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcagtttga |
38380826 |
T |
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| Q |
119 |
ggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
192 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
38380827 |
ggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38380900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 38389593 - 38389766
Alignment:
| Q |
19 |
caaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttga |
118 |
Q |
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||||||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
38389593 |
caaaacagatgcattactattaagatcaggtgaagcaagaaaatcaccaatagcaccaagttctggaaattcactccattctgctaatccatcggtttga |
38389692 |
T |
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| Q |
119 |
ggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
192 |
Q |
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||| |||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
38389693 |
ggatattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38389766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 38398356 - 38398529
Alignment:
| Q |
19 |
caaaacagatgcactgctattaagatcgggtgaagcaagaaaatcaccaatagctccaagttctggaaattcactccattctgccaatccatctgtttga |
118 |
Q |
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||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||| |
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| T |
38398356 |
caaaacagatgcactactattaagatcaggtgaaacaagaaaatcaccaatagcaccgagttctggaaattcactccattctgctaatccatcagtttga |
38398455 |
T |
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| Q |
119 |
ggagattgagtttcatgtcttctcccaactatnnnnnnntcatgttcattcattatctcacgtagaaaagatgc |
192 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
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| T |
38398456 |
ggagattgagtttcatgtcttctcccaactataaagaaatcatgttcgttcacaatctcacgtagaaaagatgc |
38398529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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