View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8985_low_64 (Length: 205)
Name: NF8985_low_64
Description: NF8985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8985_low_64 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 11493349 - 11493553
Alignment:
| Q |
1 |
ctttctcatcctcaaaacaccaaaagaaagccaaagaaaatctatcaacaggttgtttcaaaacaactctatgttcagaagaccttaacttatcattact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11493349 |
ctttctcatcctcaaaacaccaaaagaaagccaaagaaaatctatcaacaggttgtttcaaaacaactctatgttcagaagaccttaacttatcattact |
11493448 |
T |
|
| Q |
101 |
ccaagcttgcatcatatcaccaatatttaccactaatgacccttcagaaggacttatatcaatccattttccttcatgtgttttcacttgaagtcctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11493449 |
ccaagcttgcatcatatcaccaatatttaccactaatgacccttcagaaggacttatatcaatccattttccttcatgtgttttcacttgaagtcctcca |
11493548 |
T |
|
| Q |
201 |
atttc |
205 |
Q |
| |
|
||||| |
|
|
| T |
11493549 |
atttc |
11493553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 29290996 - 29290792
Alignment:
| Q |
1 |
ctttctcatcctcaaaacaccaaaagaaagccaaagaaaatctatcaacaggttgtttcaaaacaactctatgttcagaagaccttaacttatcattact |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| || | |||||||| |||||| || |||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
29290996 |
ctttttcatcctcaaaacaccaaaagaatgctagtgaaaatctgtcaacaatatgcttcaaaacaactctatgttctgaagatcttaatttatcattact |
29290897 |
T |
|
| Q |
101 |
ccaagcttgcatcatatcaccaatatttaccactaatgacccttcagaaggacttatatcaatccattttccttcatgtgttttcacttgaagtcctcca |
200 |
Q |
| |
|
||| ||||| | |||||| ||||| || || |||| || || ||| |||| |||||| |||||||||||||||| || | | |||||||| |||||| |
|
|
| T |
29290896 |
ccatgcttgaagcatatctccaatgttcacaactagtgttccctcatttggacatatatctatccattttccttcatttgatcttacttgaagccctcca |
29290797 |
T |
|
| Q |
201 |
atttc |
205 |
Q |
| |
|
||||| |
|
|
| T |
29290796 |
atttc |
29290792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University