View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_high_15 (Length: 546)
Name: NF8986_high_15
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 39812891 - 39812364
Alignment:
| Q |
1 |
cttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaa |
100 |
Q |
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| T |
39812891 |
cttaagacacgtttcacttggtcttcgttactgccaccgcttgatgcagcaaattcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaa |
39812792 |
T |
|
| Q |
101 |
gtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39812791 |
gtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagtttgccattgtggatgcctcattctacacgcatccacgcgtgtcaaata |
39812692 |
T |
|
| Q |
201 |
agttcggcagtgttccggccacgagaaaaggtgtatattcttccaaccattgtttctgcactcatgccataggtttttctctgataaaagcttgagtaat |
300 |
Q |
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| T |
39812691 |
agttcggcaatgttccggccacgagaaaaggtgtatattcttccaaccattgtttctgcactcatgccataggtttttctctgataaaagcttgagtaat |
39812592 |
T |
|
| Q |
301 |
gcatcagcaattgcttgatgatcatgaggatccacaagcaaaccattgttgagggcctaacattataacaaagaatcacaacgtcatttatttttccaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39812591 |
gcatcagcaattgcttgatgatcatgaggatccacaagcaaaccattgttgagggcctaacattataacaaagaatcacaacgtcatttatttttccaat |
39812492 |
T |
|
| Q |
401 |
gtcttgattacaactaagaaaatagtacatattgtaaaatataggaacttcctagtatgcatattttaactcagtatgatatatataaagttaatttttc |
500 |
Q |
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| T |
39812491 |
gtcttgattacaactaagaaaatagtacatgttgtaaaatataggaacttcctagtatgcatattttaactcagtatgatatatataaagttaatttttc |
39812392 |
T |
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| Q |
501 |
aattacccgattaatgtcaaccggtcca |
528 |
Q |
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| T |
39812391 |
aattacccgattaatgtcaaccggtcca |
39812364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 6e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 55 - 362
Target Start/End: Complemental strand, 15800825 - 15800518
Alignment:
| Q |
55 |
tcaccatcaattgaaagcctaagtgacatgtcctgaacatccttaagtgaatcattgaaagactcttcaacatctacatcatcttcagtagtagtagttt |
154 |
Q |
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||||||||||| || |||||||| ||||||||||| || || ||||||||||||||||| |||| || ||| || ||| ||| | | ||||||||||| |
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| T |
15800825 |
tcaccatcaatagagagcctaagagacatgtcctgcacgtctttaagtgaatcattgaatgactggtcgacagttatatcgtctcctggagtagtagttt |
15800726 |
T |
|
| Q |
155 |
gccattgtggatgcctcattctacacgcatccacgcgtgtcaaataagttcggcagtgttccggccacgagaaaaggtgtatattcttccaaccattgtt |
254 |
Q |
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| T |
15800725 |
gccattgtggatgcctcatcctgcaagccgcgactcgagtcaaataagtacgacagtgttcgggccacgagaataggtgtatattcttccagccattttt |
15800626 |
T |
|
| Q |
255 |
tctgcactcatgccataggtttttctctgataaaagcttgagtaatgcatcagcaattgcttgatgatcatgaggatccacaagcaaaccattgttgagg |
354 |
Q |
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|||||| |||||||| |||||||||||||| || | |||||| ||||||| || ||||||||| ||||| ||||| |||||||||||||| || ||||| |
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| T |
15800625 |
tctgcagtcatgccacaggtttttctctgacaacaacttgagcaatgcattagtaattgcttgctgatcgtgagggtccacaagcaaaccgttattgaga |
15800526 |
T |
|
| Q |
355 |
gcctaaca |
362 |
Q |
| |
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|||||||| |
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| T |
15800525 |
gcctaaca |
15800518 |
T |
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