View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_high_23 (Length: 409)

Name: NF8986_high_23
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_high_23
NF8986_high_23
[»] chr6 (30 HSPs)
chr6 (18-400)||(17168166-17168548)
chr6 (312-388)||(6389729-6389805)
chr6 (248-367)||(34446572-34446691)
chr6 (311-375)||(19602177-19602241)
chr6 (288-367)||(26247433-26247512)
chr6 (312-388)||(2153884-2153960)
chr6 (337-389)||(7625107-7625159)
chr6 (311-366)||(30781290-30781345)
chr6 (315-381)||(12086345-12086411)
chr6 (317-367)||(12235521-12235571)
chr6 (334-394)||(677817-677877)
chr6 (319-367)||(6299519-6299567)
chr6 (319-367)||(6306329-6306377)
chr6 (348-388)||(10760874-10760914)
chr6 (341-373)||(33135833-33135865)
chr6 (305-387)||(9024166-9024248)
chr6 (332-387)||(17422272-17422327)
chr6 (341-388)||(33135569-33135616)
chr6 (341-387)||(1893395-1893441)
chr6 (307-373)||(8389465-8389530)
chr6 (321-366)||(9195760-9195805)
chr6 (339-388)||(13211305-13211354)
chr6 (249-393)||(17327590-17327733)
chr6 (317-366)||(24832596-24832645)
chr6 (334-399)||(34447377-34447442)
chr6 (322-367)||(34895041-34895086)
chr6 (321-389)||(7086780-7086848)
chr6 (321-393)||(7938097-7938169)
chr6 (348-388)||(33303645-33303685)
chr6 (249-321)||(34595182-34595253)
[»] chr5 (21 HSPs)
chr5 (294-367)||(43554528-43554601)
chr5 (305-365)||(39695989-39696049)
chr5 (305-400)||(26205750-26205845)
chr5 (311-393)||(5467974-5468056)
chr5 (315-387)||(7997166-7997238)
chr5 (288-367)||(25863211-25863290)
chr5 (317-366)||(31264446-31264495)
chr5 (310-358)||(36577671-36577719)
chr5 (328-367)||(2577193-2577232)
chr5 (312-367)||(18607094-18607149)
chr5 (325-367)||(42469228-42469270)
chr5 (348-389)||(7089126-7089167)
chr5 (348-389)||(9878065-9878106)
chr5 (294-387)||(14574029-14574121)
chr5 (334-387)||(24906320-24906373)
chr5 (341-394)||(32444746-32444799)
chr5 (334-366)||(12927662-12927694)
chr5 (349-389)||(21049653-21049693)
chr5 (314-366)||(21137697-21137749)
chr5 (249-321)||(21576685-21576756)
chr5 (341-389)||(39205865-39205913)
[»] chr3 (24 HSPs)
chr3 (294-389)||(14223832-14223927)
chr3 (295-388)||(25652011-25652104)
chr3 (305-368)||(25892466-25892529)
chr3 (249-367)||(25074796-25074914)
chr3 (287-377)||(27903629-27903719)
chr3 (315-367)||(15864840-15864892)
chr3 (305-367)||(12704647-12704709)
chr3 (304-362)||(21367289-21367347)
chr3 (309-367)||(52369782-52369840)
chr3 (295-367)||(25326433-25326505)
chr3 (308-388)||(41319303-41319383)
chr3 (248-367)||(21211295-21211414)
chr3 (317-367)||(3730167-3730217)
chr3 (321-387)||(20691306-20691372)
chr3 (315-388)||(24205041-24205114)
chr3 (305-366)||(34307770-34307831)
chr3 (341-393)||(10504929-10504981)
chr3 (320-366)||(1830351-1830397)
chr3 (305-367)||(8903439-8903500)
chr3 (321-367)||(40150577-40150623)
chr3 (348-385)||(18268038-18268075)
chr3 (318-367)||(34189434-34189483)
chr3 (295-367)||(16789635-16789702)
chr3 (315-367)||(25365469-25365521)
[»] chr7 (19 HSPs)
chr7 (309-367)||(29812658-29812716)
chr7 (288-388)||(4017767-4017867)
chr7 (248-364)||(7133211-7133327)
chr7 (315-367)||(23751907-23751959)
chr7 (308-388)||(23930205-23930285)
chr7 (341-393)||(30516383-30516435)
chr7 (310-388)||(43249979-43250057)
chr7 (305-367)||(38804545-38804607)
chr7 (348-385)||(927870-927907)
chr7 (294-367)||(17780063-17780136)
chr7 (318-367)||(22683758-22683807)
chr7 (315-375)||(12278834-12278894)
chr7 (334-389)||(5235971-5236026)
chr7 (348-387)||(30177037-30177076)
chr7 (305-367)||(10230063-10230125)
chr7 (341-387)||(17285051-17285097)
chr7 (321-389)||(15902807-15902875)
chr7 (321-373)||(23128667-23128719)
chr7 (329-373)||(46644701-46644745)
[»] chr2 (22 HSPs)
chr2 (309-367)||(23354646-23354704)
chr2 (311-367)||(25544488-25544544)
chr2 (309-367)||(23354989-23355047)
chr2 (311-367)||(24011043-24011099)
chr2 (288-388)||(37986765-37986865)
chr2 (309-364)||(11307998-11308053)
chr2 (309-367)||(38919213-38919271)
chr2 (313-367)||(10535757-10535811)
chr2 (305-367)||(19573985-19574047)
chr2 (270-323)||(13272954-13273007)
chr2 (315-367)||(12748691-12748743)
chr2 (348-388)||(19608389-19608429)
chr2 (321-388)||(30527601-30527668)
chr2 (321-367)||(6249206-6249252)
chr2 (334-388)||(20539693-20539747)
chr2 (341-387)||(25543221-25543267)
chr2 (321-367)||(34006997-34007043)
chr2 (350-388)||(43188157-43188195)
chr2 (348-389)||(12464882-12464923)
chr2 (296-367)||(6698440-6698512)
chr2 (311-367)||(30563416-30563472)
chr2 (321-393)||(31018571-31018643)
[»] chr4 (21 HSPs)
chr4 (288-367)||(3144625-3144704)
chr4 (310-387)||(20743273-20743350)
chr4 (294-387)||(8820395-8820488)
chr4 (305-354)||(23386166-23386215)
chr4 (294-367)||(24343514-24343587)
chr4 (312-373)||(31243545-31243606)
chr4 (309-365)||(6273953-6274009)
chr4 (325-365)||(49659533-49659573)
chr4 (249-327)||(4136267-4136344)
chr4 (249-367)||(53381530-53381644)
chr4 (334-393)||(21539886-21539945)
chr4 (294-364)||(944647-944717)
chr4 (310-372)||(17876157-17876219)
chr4 (334-388)||(36635310-36635364)
chr4 (323-373)||(50848311-50848361)
chr4 (344-393)||(9299083-9299132)
chr4 (322-387)||(34515881-34515946)
chr4 (323-388)||(55941011-55941076)
chr4 (350-386)||(25216905-25216941)
chr4 (323-367)||(39507127-39507171)
chr4 (323-367)||(47191001-47191045)
[»] chr1 (16 HSPs)
chr1 (305-367)||(42004937-42004999)
chr1 (305-387)||(6936390-6936472)
chr1 (317-393)||(22794080-22794156)
chr1 (316-364)||(6573999-6574047)
chr1 (305-367)||(40747763-40747825)
chr1 (334-388)||(41017423-41017477)
chr1 (334-367)||(23440017-23440050)
chr1 (334-387)||(43328454-43328507)
chr1 (321-393)||(36878442-36878514)
chr1 (249-328)||(32899931-32900010)
chr1 (312-367)||(39101179-39101234)
chr1 (309-367)||(11634118-11634176)
chr1 (341-382)||(3921659-3921700)
chr1 (341-385)||(2445859-2445903)
chr1 (321-373)||(39130773-39130825)
chr1 (318-354)||(48415728-48415764)
[»] chr8 (17 HSPs)
chr8 (309-373)||(13845235-13845299)
chr8 (315-367)||(39820436-39820488)
chr8 (315-367)||(35431140-35431192)
chr8 (312-367)||(13009490-13009545)
chr8 (305-388)||(26915230-26915313)
chr8 (311-373)||(40063952-40064014)
chr8 (310-388)||(44067502-44067580)
chr8 (315-367)||(1676719-1676771)
chr8 (305-388)||(3658133-3658216)
chr8 (341-386)||(14227210-14227255)
chr8 (341-388)||(11815815-11815862)
chr8 (317-368)||(28883880-28883931)
chr8 (328-366)||(12559119-12559157)
chr8 (350-391)||(10170421-10170462)
chr8 (305-382)||(14513164-14513241)
chr8 (341-381)||(2648274-2648314)
chr8 (341-373)||(34201072-34201104)
[»] scaffold0199 (1 HSPs)
scaffold0199 (315-367)||(1956-2008)
[»] scaffold0598 (1 HSPs)
scaffold0598 (309-388)||(8047-8126)
[»] scaffold0022 (1 HSPs)
scaffold0022 (334-389)||(90828-90883)
[»] scaffold0049 (1 HSPs)
scaffold0049 (322-364)||(56932-56974)
[»] scaffold0007 (1 HSPs)
scaffold0007 (310-388)||(225263-225341)
[»] scaffold0024 (1 HSPs)
scaffold0024 (322-366)||(68249-68293)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 17168166 - 17168548
Alignment:
Q  18 acttttataacctgtttctgttttcggctcgtgtagtggtgcgccttgtacccgctcgttgttaataaaatttagctgattctnnnnnnnngtttagttc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  17168166 acttttataacctgtttctgttttcggctcgtgtagtggtgcgccttgtacccgctcgttgttaataaaatttagctgattctaaaaaaaagtttagttc 17168265  T
Q  118 agttttaggagttcagtagagacatgacaatagcatttgtactgaaattcttatgaaacatgagttatatcttgactaacataaaaacctttgctggtat 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17168266 agttttaggagttcagtagagacatgacagtagcatttgtactgaaattcttatgaaacatgagttatatcttgactaacataaaaacctttgctgatat 17168365  T
Q  218 attgaacaaagaaagatctatatattgaccactatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccg 317  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17168366 attgaacaaagaaagatctatatattgactactatgaagcaagtacattccacggattaggggtgtcctagtgttagacacgtgtcagtgtccgacaccg 17168465  T
Q  318 acacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgtgatgtcc 400  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  17168466 acacgacacctattattacactaaattatatcattttctcaaattattatcagtgttggcgtgtcagtgtctatgtcatgtcc 17168548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 6389805 - 6389729
Alignment:
Q  312 acaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||| | ||||| ||||||    
T  6389805 acaccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcggcgtgtgagtgtc 6389729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 34446691 - 34446572
Alignment:
Q  248 actatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattata 347  Q
    ||||||||||| | ||| |||  |||||||| ||| || ||||| ||| ||| ||| ||||  |||||||||||||||||||||| |||||| ||||||     
T  34446691 actatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatg 34446592  T
Q  348 tcattttctcaaattattat 367  Q
    ||||||||||||||||||||    
T  34446591 tcattttctcaaattattat 34446572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 375
Target Start/End: Original strand, 19602177 - 19602241
Alignment:
Q  311 gacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttg 375  Q
    ||||||||||| | |||||||| |||||| ||||||||||||||||||||||||||| |||||||    
T  19602177 gacaccgacacaatacctatgattacactgaattatatcattttctcaaattattatcagtgttg 19602241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 26247512 - 26247433
Alignment:
Q  288 gtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||| ||||||||||  ||||||||||||||||||| |||||||| || |||||| ||| ||||||||| ||||||||||    
T  26247512 gtgtcagacacgtgttggtgtccgacaccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattat 26247433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 2153884 - 2153960
Alignment:
Q  312 acaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||| || |||||||||| | ||||||||||||||||||||||| |||||||| || |||| | |||||| |||||    
T  2153884 acaccaacgcgacacctataattacactaaattatatcattttcttaaattattgttcgtgtcggcgtgtcggtgtc 2153960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 337 - 389
Target Start/End: Complemental strand, 7625159 - 7625107
Alignment:
Q  337 actaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||||||||||||||||||||||||||||||  |||| |||||||| ||||||    
T  7625159 actaaattatatcattttctcaaattattatccgtgtcgacgtgtcggtgtct 7625107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 30781290 - 30781345
Alignment:
Q  311 gacaccgacacgacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    |||||||||| ||||||||||| |||| | |||||| |||||||||||||||||||    
T  30781290 gacaccgacatgacacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 381
Target Start/End: Original strand, 12086345 - 12086411
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgt 381  Q
    |||||||||||||||||| || ||| |||||| ||||| ||||||||||||||  |||| |||||||    
T  12086345 ccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgtgt 12086411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 12235521 - 12235571
Alignment:
Q  317 gacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||| |||||| |||||| |||||||||| |||||||||    
T  12235521 gacacgacacctatgattacactgaattatgtcattttctctaattattat 12235571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 394
Target Start/End: Complemental strand, 677877 - 677817
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgtg 394  Q
    ||||||| ||||||| |||||||||||||||||  ||||| | ||||||||||||| ||||    
T  677877 tacactatattatatgattttctcaaattattaacagtgtcggcgtgtcagtgtctgtgtg 677817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 6299567 - 6299519
Alignment:
Q  319 cacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| | |||| | |||||||||||||||||||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattat 6299519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 367
Target Start/End: Complemental strand, 6306377 - 6306329
Alignment:
Q  319 cacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| | |||| | |||||||||||||||||||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattat 6306329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 388
Target Start/End: Original strand, 10760874 - 10760914
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  10760874 tcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 33135865 - 33135833
Alignment:
Q  341 aattatatcattttctcaaattattattagtgt 373  Q
    |||||||||||||||||||||||||||||||||    
T  33135865 aattatatcattttctcaaattattattagtgt 33135833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 9024166 - 9024248
Alignment:
Q  305 gtgtccgacaccgacac-gacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    ||||||||||| ||||| ||||| ||||| |||| | |||||| ||||||||||||||||| ||| |||| |||||||| ||||    
T  9024166 gtgtccgacac-gacactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt 9024248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 332 - 387
Target Start/End: Original strand, 17422272 - 17422327
Alignment:
Q  332 actacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||| | |||||||||||||||||||||||||||  |||| ||||||| |||||    
T  17422272 actacattcaattatatcattttctcaaattattatcggtgtcgacgtgttagtgt 17422327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 33135616 - 33135569
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||||||||||||| || || |||||||||| ||||||||||    
T  33135616 aattatatcattttctcaaaatactaatagtgttgacatgtcagtgtc 33135569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Original strand, 1893395 - 1893441
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||||||||||||||||||||||||| ||| |||| |||| ||||    
T  1893395 aattatatcattttctcaaattattattggtgatgacatgtccgtgt 1893441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 8389465 - 8389530
Alignment:
Q  307 gtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    |||||||||||||| |||| |||| | |||||| |||||||| ||||||| ||||||||| ||||||    
T  8389465 gtccgacaccgacatgaca-ctataattacactgaattatatgattttcttaaattattagtagtgt 8389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 9195760 - 9195805
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    |||||| ||| | ||||||||||||| |||||||||||||||||||    
T  9195760 cgacacatataattacactaaattatgtcattttctcaaattatta 9195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 13211305 - 13211354
Alignment:
Q  339 taaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||| |||||||||||||||||||| | ||| |||||||| |||||    
T  13211305 taaattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtc 13211354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 393
Target Start/End: Original strand, 17327590 - 17327733
Alignment:
Q  249 ctatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacac-gacacctatgactacactaaattata 347  Q
    |||||||||| | ||| ||| ||||||||| ||| ||  |||| ||||||||||| ||||||||||| ||||| ||||| |||   |||||||||||||     
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtc-gtgtccgacac-gacactgacacatatagttacactaaattatg 17327687  T
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    | ||||||||||| | ||| | |||| | ||| ||| |||||||||    
T  17327688 tgattttctcaaaatcttagttgtgtcggcgtatcactgtctatgt 17327733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 24832645 - 24832596
Alignment:
Q  317 gacacgacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    |||||||||| ||| | ||||||||||||||  |||||||||||||||||    
T  24832645 gacacgacacatataattacactaaattataagattttctcaaattatta 24832596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 399
Target Start/End: Original strand, 34447377 - 34447442
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgtgatgtc 399  Q
    ||||||||||||||| ||||| |||||||||||   |||||| ||||||| ||||| ||| |||||    
T  34447377 tacactaaattatatgattttatcaaattattaacggtgttggcgtgtcattgtctgtgttatgtc 34447442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 367
Target Start/End: Original strand, 34895041 - 34895086
Alignment:
Q  322 gacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||||||| |||||| |||| ||| ||||||||||||||||||    
T  34895041 gacacctatgattacactgaattgtataattttctcaaattattat 34895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 7086848 - 7086780
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||||| ||| | ||||||||||||| | |||||||||||||||||  ||||  |||||||| ||||||    
T  7086848 cgacacatataattacactaaattatgtgattttctcaaattattagcagtgccgacgtgtcggtgtct 7086780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 7938169 - 7938097
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    |||||| ||| | ||||||||||||||| ||||| |||||||||||   |||| | |||||||||||| ||||    
T  7938169 cgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgt 7938097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 33303685 - 33303645
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||| |||||||||||||||||| || |||||||||||    
T  33303685 tcattttttcaaattattattagtgtcgatgtgtcagtgtc 33303645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 321
Target Start/End: Complemental strand, 34595253 - 34595182
Alignment:
Q  249 ctatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacac 321  Q
    |||||||||| | ||| ||| ||||||||| ||| ||  |||| ||||||||||| |||||||||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacac 34595182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 43554601 - 43554528
Alignment:
Q  294 gacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43554601 gacacgcgtcggtgtccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 39695989 - 39696049
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattatt 365  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39695989 gtgtcggacaccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 400
Target Start/End: Original strand, 26205750 - 26205845
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgtgatgtcc 400  Q
    |||||||||||| ||||||||||||||| |||||| |||||| ||||||||||||| | ||||  || | |||||||||||||| |||| ||||||    
T  26205750 gtgtccgacaccaacacgacacctatgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtccatgtcatgtcc 26205845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 393
Target Start/End: Original strand, 5467974 - 5468056
Alignment:
Q  311 gacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    |||||||||||||||||||| | |||||| |||||| | ||||| ||||||||||||  || |||||||||||||||||||||    
T  5467974 gacaccgacacgacacctataattacactgaattatgtgattttatcaaattattatcggtattgacgtgtcagtgtctatgt 5468056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 387
Target Start/End: Original strand, 7997166 - 7997238
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||||||||| ||| | ||||||  ||||||||||||||||||||||||||  |||||| |||||||||||    
T  7997166 ccgacacgacacttataattacactgtattatatcattttctcaaattattatccgtgttggcgtgtcagtgt 7997238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 367
Target Start/End: Complemental strand, 25863290 - 25863211
Alignment:
Q  288 gtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||| |||||||  || ||| ||||||| |||||||||| ||| | |||||| |||||||||||||||||||||||||||    
T  25863290 gtgtcagacacgcatcggtgcccgacactgacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  317 gacacgacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    |||||||||| ||||| |||||| |||||| |||||||||||||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Original strand, 36577671 - 36577719
Alignment:
Q  310 cgacaccgacacgacacctatgactacactaaattatatcattttctca 358  Q
    ||||||||||||||||| ||| | || ||||||||||||||||||||||    
T  36577671 cgacaccgacacgacacatataattatactaaattatatcattttctca 36577719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 367
Target Start/End: Original strand, 2577193 - 2577232
Alignment:
Q  328 tatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattat 2577232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 18607094 - 18607149
Alignment:
Q  312 acaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||| |||||||||||||||| |||| | |||||| | ||||||||||||||||||    
T  18607094 acacagacacgacacctatgattacattgaattatgttattttctcaaattattat 18607149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 367
Target Start/End: Complemental strand, 42469270 - 42469228
Alignment:
Q  325 acctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattat 42469228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 7089126 - 7089167
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||||||||||||||||||||||||||||  ||| |||||||    
T  7089126 tcattttctcaaattattattagtgttgatatgttagtgtct 7089167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 9878065 - 9878106
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||| |||||||||||||||| |||| |||||||||||||||    
T  9878065 tcatattctcaaattattattggtgtcgacgtgtcagtgtct 9878106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 387
Target Start/End: Original strand, 14574029 - 14574121
Alignment:
Q  294 gacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||| ||| | ||||||||| ||||||| |||||| | |||||| |||||||||||||  ||||||||||| | |||| | |||||| ||||    
T  14574029 gacacgcgtcggcgtccgacactgacacga-acctataattacactgaattatatcatttcatcaaattattactcgtgtcggcgtgtcggtgt 14574121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 387
Target Start/End: Original strand, 24906320 - 24906373
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||| |||||| ||||||| ||||||||||||  |||||| |||||||||||    
T  24906320 tacactgaattatgtcattttttcaaattattatctgtgttggcgtgtcagtgt 24906373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 394
Target Start/End: Complemental strand, 32444799 - 32444746
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgtg 394  Q
    |||||| |||| |||||||||| ||| | |||||||||||||||||||| ||||    
T  32444799 aattatgtcatcttctcaaattgttaatggtgttgacgtgtcagtgtctgtgtg 32444746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 12927694 - 12927662
Alignment:
Q  334 tacactaaattatatcattttctcaaattatta 366  Q
    ||||||||||||||| |||||||||||||||||    
T  12927694 tacactaaattatatgattttctcaaattatta 12927662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 21049653 - 21049693
Alignment:
Q  349 cattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    ||||||| ||||||||||||||||| ||||||| |||||||    
T  21049653 cattttcgcaaattattattagtgtcgacgtgttagtgtct 21049693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 21137749 - 21137697
Alignment:
Q  314 accgacacgacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    ||||||||||||||||||| | |||| |||||  ||||||||||| |||||||    
T  21137749 accgacacgacacctatgatttcactgaattacgtcattttctcagattatta 21137697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 21576685 - 21576756
Alignment:
Q  249 ctatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacac 321  Q
    |||||||||| | ||| ||| ||||||||| ||| || ||||| ||||||||||| |||||||||| ||||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtc-gtgtccgacatcgacac 21576756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 389
Target Start/End: Complemental strand, 39205913 - 39205865
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||||||| |||||||||||||||||  ||||| |||||||| ||||||    
T  39205913 aattatatgattttctcaaattattagcagtgtcgacgtgtccgtgtct 39205865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 294 - 389
Target Start/End: Original strand, 14223832 - 14223927
Alignment:
Q  294 gacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||  |||| | |||||| ||||||    
T  14223832 gacacgtgtcggtgtcggacaccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatctgtgtcggcgtgtcggtgtct 14223927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 295 - 388
Target Start/End: Original strand, 25652011 - 25652104
Alignment:
Q  295 acacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||||| |||||| |||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||  |||||| ||||| ||||||    
T  25652011 acacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcattttctcaaattattatccgtgttggcgtgttagtgtc 25652104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 368
Target Start/End: Complemental strand, 25892529 - 25892466
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattatt 368  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||||||    
T  25892529 gtgtccgacactgacacgacacctatgattacactgaattatatcattttcttaaattattatt 25892466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 367
Target Start/End: Complemental strand, 25074914 - 25074796
Alignment:
Q  249 ctatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatat 348  Q
    |||||||||| | ||| ||| ||||||||| ||| || |||||  |||||| ||  ||||| ||||||||||| || ||||||| |||||| |||||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  349 cattttctcaaattattat 367  Q
    |||||||||||||||||||    
T  25074814 cattttctcaaattattat 25074796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 377
Target Start/End: Complemental strand, 27903719 - 27903629
Alignment:
Q  287 agtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgac 377  Q
    ||||| ||||||| ||| || |||||||||||||| |||| ||||| |||| ||||||||||| |||||||||||||||||  ||||||||    
T  27903719 agtgtcagacacgcgtcggtatccgacaccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgttgac 27903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 15864892 - 15864840
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  15864892 ccgacacgacacctatgattacactaaattatatcattttttcaaattattat 15864840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 12704647 - 12704709
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||||||||||||| |||| | |||||| ||||||| ||||||||||||    
T  12704647 gtgtccgacaccgacacgacacctatgattacattgaattatgtcattttttcaaattattat 12704709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 21367347 - 21367289
Alignment:
Q  304 agtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaatt 362  Q
    |||||||||||||||||| ||| | |||| ||||||||||||| |||||||||||||||    
T  21367347 agtgtccgacaccgacacaacaaccatgattacactaaattatgtcattttctcaaatt 21367289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 52369840 - 52369782
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||||||||| |||| | |||||| | ||||||||||||||||||    
T  52369840 ccgacaccgacacgacacctatgattacattgaattatgtaattttctcaaattattat 52369782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 367
Target Start/End: Complemental strand, 25326505 - 25326433
Alignment:
Q  295 acacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||| ||| |||||||||||| |||||||| |||| | ||||||||||||||| ||||| | ||||||||||    
T  25326505 acacgcgtcggtgtccgacaccaacacgacatctataattacactaaattatattatttttttaaattattat 25326433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 388
Target Start/End: Original strand, 41319303 - 41319383
Alignment:
Q  308 tccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||||||||||||||| ||  | |||| | |||||| ||||||| ||||||||||||| |||| |||||||| |||||    
T  41319303 tccgacaccgacacgacacatacaattacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtc 41319383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 21211414 - 21211295
Alignment:
Q  248 actatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattata 347  Q
    |||||||||||   ||| ||| ||||||||| ||| || |||||  |||||| ||| |||||  |||||||||||||||| || | |||||| || |||     
T  21211414 actatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatg 21211315  T
Q  348 tcattttctcaaattattat 367  Q
    | ||||||||||||||||||    
T  21211314 taattttctcaaattattat 21211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 3730167 - 3730217
Alignment:
Q  317 gacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||| |||||| |||||| ||||| ||||||||||||||    
T  3730167 gacacgacacctatgattacactgaattatgtcattatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 20691372 - 20691306
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||| ||||| |||||| |||||| |||||||||||||||||||| ||| |  ||||||||||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatcagtttctacgtgtcagtgt 20691306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 24205041 - 24205114
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||||| ||| | ||||||  ||||| ||||||||||||||||||||  |||| | ||||||||||||    
T  24205041 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 24205114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 366
Target Start/End: Original strand, 34307770 - 34307831
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    |||||||||||||||||||||| ||| | |||||| || ||| | |||||||||||||||||    
T  34307770 gtgtccgacaccgacacgacacttataattacactgaaatatgtgattttctcaaattatta 34307831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 10504929 - 10504981
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    |||||||| ||||| ||||||||||||  ||||||||||||||||| ||||||    
T  10504929 aattatataattttttcaaattattatcggtgttgacgtgtcagtgcctatgt 10504981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  320 acgacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    ||||||||||||| |||||| |||||| ||||||||| |||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 8903500 - 8903439
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||| || ||||||||||||||| | ||||||||| ||| ||||||||||||| ||||||    
T  8903500 gtgtccggcatcgacacgacacctataattacactaaa-tatgtcattttctcaaaatattat 8903439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 40150577 - 40150623
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||| ||||| |||| | |||||||||||||||||||||||||||    
T  40150577 cgacacatatgattacattgaattatatcattttctcaaattattat 40150623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 18268038 - 18268075
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagt 385  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  18268038 tcattttctcaaattattatcagtgttgacatgtcagt 18268075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 34189483 - 34189434
Alignment:
Q  318 acacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| || |||||| || ||| ||||||||||||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattat 34189434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 16789635 - 16789702
Alignment:
Q  295 acacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||||  |||||||| ||||||||||| |||     |||||| |||||| ||||||||||||||||||||    
T  16789635 acacgtgttggtgtccgataccgacacgacgcct-----tacactgaattatgtcattttctcaaattattat 16789702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 25365521 - 25365469
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| ||||| |||||  |||||| |||| |||||||||||||||    
T  25365521 ccgacacgacacttatgattacaccgaattatgtcatattctcaaattattat 25365469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 29812658 - 29812716
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29812658 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 288 - 388
Target Start/End: Original strand, 4017767 - 4017867
Alignment:
Q  288 gtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||| ||||||  ||| |||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||||||||  |||| | |||||| ||||    
T  4017767 gtgtcagacacacgtcggtgtccgacaccaacacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcggcgtgtcggtgt 4017866  T
Q  388 c 388  Q
    |    
T  4017867 c 4017867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 364
Target Start/End: Original strand, 7133211 - 7133327
Alignment:
Q  248 actatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattata 347  Q
    ||||||||||| | ||  ||| | ||||||| ||| || |||||  |||||| ||| |||||||||||||||||  ||||||||| |||||| ||||||     
T  7133211 actatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattatg 7133310  T
Q  348 tcattttctcaaattat 364  Q
    |||||||||||||||||    
T  7133311 tcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 23751959 - 23751907
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  23751959 ccgacacgacacctatgattacactaaattatatcattttatcaaattattat 23751907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 23930285 - 23930205
Alignment:
Q  308 tccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||||||| |||||||||| |||||| |||||| |||||||||||||||| |||  |||| || |||||| ||||    
T  23930285 tccgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgtgtcgatgtgtcaatgtc 23930205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 341 - 393
Target Start/End: Original strand, 30516383 - 30516435
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  30516383 aattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtccatgt 30516435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 43250057 - 43249979
Alignment:
Q  310 cgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||||||||||||| ||| | ||||||  ||||| ||||||||||||||||||||  |||| | ||||||||||||    
T  43250057 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 43249979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 38804545 - 38804607
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| ||||||||||||||| ||| ||  ||||| ||||||||| ||||||||||    
T  38804545 gtgtccgacaccaacacgacacctatgattaccctggattatgtcattttctgaaattattat 38804607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 385
Target Start/End: Original strand, 927870 - 927907
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagt 385  Q
    |||||||||||||||||||||||||| |||||||||||    
T  927870 tcattttctcaaattattattagtgtcgacgtgtcagt 927907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 17780063 - 17780136
Alignment:
Q  294 gacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||| ||| |||| ||||||||||||||||||||| | ||||   |||||| ||||||||| ||||||||||    
T  17780063 gacacgcgtcggtgttcgacaccgacacgacacctattattacatagaattatgtcattttcttaaattattat 17780136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 22683758 - 22683807
Alignment:
Q  318 acacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||||||||||| | |||| ||||||||||| |||||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattat 22683807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 12278894 - 12278834
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttg 375  Q
    |||||||||||| ||| | |||||| |||||| ||||||||| |||||||||| |||||||    
T  12278894 ccgacacgacacatataattacactgaattatgtcattttcttaaattattatcagtgttg 12278834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 5236026 - 5235971
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    ||||||||||||||| ||||||| |||||||||   |||| |||||||||||||||    
T  5236026 tacactaaattatataattttcttaaattattagcggtgtcgacgtgtcagtgtct 5235971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 348 - 387
Target Start/End: Original strand, 30177037 - 30177076
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    ||||||||||||||||||| | ||||||||||||||||||    
T  30177037 tcattttctcaaattattactggtgttgacgtgtcagtgt 30177076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 10230063 - 10230125
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| |||||||| ||||   |||||| |||||| |||||| |||||||||||||    
T  10230063 gtgtccgacaccaacacgacatctatacttacactgaattatgtcatttcctcaaattattat 10230125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 17285097 - 17285051
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||||||||| ||||||||||||||| |||||||| ||| |||||    
T  17285097 aattatatcattctctcaaattattattggtgttgacttgttagtgt 17285051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 389
Target Start/End: Complemental strand, 15902875 - 15902807
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||||| ||| | ||||||||||||| | ||||| ||||||||||||| |||| | | |||||||||||    
T  15902875 cgacacatataattacactaaattatgtgattttatcaaattattattggtgtcggcatgtcagtgtct 15902807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 23128667 - 23128719
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    |||||| ||||| |||||| ||||||||  |||||||||||||||||| ||||    
T  23128667 cgacacatatgattacactgaattatatggttttctcaaattattattggtgt 23128719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 46644701 - 46644745
Alignment:
Q  329 atgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    |||| ||||||||||||||| ||||| ||||||||||||| ||||    
T  46644701 atgattacactaaattatataattttttcaaattattattggtgt 46644745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 23354646 - 23354704
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23354646 ccgacaccgacacgacacctatgattacactaaattatatcattttctcaaattattat 23354704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 25544544 - 25544488
Alignment:
Q  311 gacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  25544544 gacaccgacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 23354989 - 23355047
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  23354989 ccgacaccgacatgacacctatgattgcactaaattatatcattttctcaaattattat 23355047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 24011099 - 24011043
Alignment:
Q  311 gacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||    
T  24011099 gacaccgacgcgacacctatgattacactaaattatgtcattttctcaaattattat 24011043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 388
Target Start/End: Complemental strand, 37986865 - 37986765
Alignment:
Q  288 gtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||| ||||||  ||| |||||||||||| |||||| |||||||| |||||| || ||||||||||| ||||||||||||  |||| | |||||||||||    
T  37986865 gtgtcagacactcgtcggtgtccgacaccaacacgatacctatgattacactcaaatatatcattttttcaaattattatctgtgtcggcgtgtcagtgt 37986766  T
Q  388 c 388  Q
    |    
T  37986765 c 37986765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 11307998 - 11308053
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattat 364  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||    
T  11307998 ccgacaccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 367
Target Start/End: Complemental strand, 38919271 - 38919213
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||  ||||||||||||||| ||||||||| |||| |||||||||||||||||||    
T  38919271 ccgacactaacacgacacctatgattacactaaactataacattttctcaaattattat 38919213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 10535757 - 10535811
Alignment:
Q  313 caccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||| ||||||||| ||||| |||||| |||||| ||||||||||||||||||||    
T  10535757 caccaacacgacacttatgattacactgaattatgtcattttctcaaattattat 10535811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 367
Target Start/End: Complemental strand, 19574047 - 19573985
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||| ||||||| | |||||| |||||| | ||||||| ||||||||||    
T  19574047 gtgtccgacaccgacacgccacctataattacactgaattatgttattttcttaaattattat 19573985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 323
Target Start/End: Original strand, 13272954 - 13273007
Alignment:
Q  270 cggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacga 323  Q
    |||| |||||||| ||||||||| |||||||||| ||||| |||||||||||||    
T  13272954 cggactaggggtgtcctagtgttggacacgtgtcggtgtcggacaccgacacga 13273007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 12748743 - 12748691
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||| |||||||||| |||||| || ||| ||||||||||||||||||||    
T  12748743 ccgacacaacacctatgattacactgaactatgtcattttctcaaattattat 12748691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 19608429 - 19608389
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||||||||||||| ||||||||||||| ||||||    
T  19608429 tcattttctcaaattattatcagtgttgacgtgtgagtgtc 19608389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 30527601 - 30527668
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||| ||| | ||||||||||||||| |||||||||||||||||  ||||| |  |||||||||||    
T  30527601 cgacacatataattacactaaattatatgattttctcaaattattaacagtgtgggtgtgtcagtgtc 30527668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 367
Target Start/End: Complemental strand, 6249252 - 6249206
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| |||||| |||||||  ||||||||||||||||||    
T  6249252 cgacacctatgaatacactgaattataatattttctcaaattattat 6249206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 20539693 - 20539747
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||||||||||| ||||| |||||||||||   |||| ||||||||||||||    
T  20539693 tacactaaattatatgattttttcaaattattagctgtgtcgacgtgtcagtgtc 20539747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 387
Target Start/End: Complemental strand, 25543267 - 25543221
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||||||||||  | |||||||||||||||| |||||||||||||    
T  25543267 aattatatcatttcttgaaattattattagtgtcgacgtgtcagtgt 25543221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 367
Target Start/End: Original strand, 34006997 - 34007043
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| |||||| |||||| ||| ||||||||||||||||    
T  34006997 cgacacctatgattacactgaattatgtcaatttctcaaattattat 34007043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 388
Target Start/End: Complemental strand, 43188195 - 43188157
Alignment:
Q  350 attttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  43188195 attttctcaagttattattggtgttgacgtgtcagtgtc 43188157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 12464882 - 12464923
Alignment:
Q  348 tcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    ||||||||||||||||||||| |||| | |||||||||||||    
T  12464882 tcattttctcaaattattattggtgtcggcgtgtcagtgtct 12464923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 367
Target Start/End: Original strand, 6698440 - 6698512
Alignment:
Q  296 cacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatca-ttttctcaaattattat 367  Q
    ||||||||||| | ||||||| | ||||||| ||||| |||||| |||||| ||| |||| ||||||||||||    
T  6698440 cacgtgtcagtattcgacaccaatacgacacgtatgattacactgaattatttcacttttttcaaattattat 6698512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 30563472 - 30563416
Alignment:
Q  311 gacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||||||| ||||||||   |||| | |||||| ||||||||||||||||||||    
T  30563472 gacaccgacacaacacctatagttacattgaattatgtcattttctcaaattattat 30563416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 31018643 - 31018571
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    |||||||||| | |||||||||| || | ||||||| |||||||||   |||||| |||||||||||| ||||    
T  31018643 cgacacctataattacactaaatcatgtgattttctgaaattattagcggtgttggcgtgtcagtgtccatgt 31018571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 3144625 - 3144704
Alignment:
Q  288 gtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||| |||||| ||  ||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  3144625 gtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattatatcattttctgaaattattat 3144704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 20743273 - 20743350
Alignment:
Q  310 cgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||||||||||| |||||||||| |||||| |||||| ||||||||||||||||||||  |||| | |||||||||||    
T  20743273 cgacaccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 387
Target Start/End: Complemental strand, 8820488 - 8820395
Alignment:
Q  294 gacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    ||||||||| || ||| |||||||||||||||| ||||||| || | |||||| | ||||| ||||||||||||   |||||||||||||||||    
T  8820488 gacacgtgttagcgtcagacaccgacacgacacatatgactccattgaattatgtgattttatcaaattattatcgatgttgacgtgtcagtgt 8820395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 23386215 - 23386166
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcatttt 354  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  23386215 gtgtccgacaccgacatgacacctatgattacactaaattatatcatttt 23386166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 294 - 367
Target Start/End: Complemental strand, 24343587 - 24343514
Alignment:
Q  294 gacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||| ||| ||||| |||||||||||||||||||| | |||||| |||||| | ||||||||||||||||||    
T  24343587 gacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgtaattttctcaaattattat 24343514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 31243545 - 31243606
Alignment:
Q  312 acaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    ||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||| |||||    
T  31243545 acaccgacatgacacctatgattacactgaattatgtcattttctcaaattattataagtgt 31243606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 6274009 - 6273953
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattatt 365  Q
    ||||||||||||||||  |||| | ||||||||||||||||||||||||||||||||    
T  6274009 ccgacaccgacacgacgactataattacactaaattatatcattttctcaaattatt 6273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 365
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  325 acctatgactacactaaattatatcattttctcaaattatt 365  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 327
Target Start/End: Original strand, 4136267 - 4136344
Alignment:
Q  249 ctatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacgacacc 327  Q
    |||||||||||||||| ||  | ||||| | ||| |||||||| |||||| ||||||||||||| ||||||||||||||    
T  4136267 ctatgaagcaagtacactcttcagattaagtgtgtcctagtgtcagacacatgtcagtgtccga-accgacacgacacc 4136344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 367
Target Start/End: Original strand, 53381530 - 53381644
Alignment:
Q  249 ctatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatat 348  Q
    |||||||||| | ||| ||| ||||||||| ||| ||  ||||  || ||| |||||||||||||||||||||||| ||||| | |||||| |||    |    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacaccgacacgacgcctataattacactgaat----t 53381625  T
Q  349 cattttctcaaattattat 367  Q
    |||||||| ||||||||||    
T  53381626 cattttcttaaattattat 53381644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 393
Target Start/End: Original strand, 21539886 - 21539945
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    ||||||||||||||| ||||||| ||||||||| | |||| | | |||||||||||||||    
T  21539886 tacactaaattatatgattttcttaaattattaatggtgtcggcatgtcagtgtctatgt 21539945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 294 - 364
Target Start/End: Original strand, 944647 - 944717
Alignment:
Q  294 gacacgtgtcagtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattat 364  Q
    |||||| ||| |||| |||||| |||||||||||||| | |||||||||||   ||||| |||||||||||    
T  944647 gacacgcgtctgtgttcgacactgacacgacacctataattacactaaattgcgtcattatctcaaattat 944717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 17876219 - 17876157
Alignment:
Q  310 cgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtg 372  Q
    |||||| |||||| ||| ||||| ||||||||||||| ||||||||| |||||| ||| ||||    
T  17876219 cgacactgacacggcacatatgattacactaaattatgtcattttctaaaattagtatcagtg 17876157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 388
Target Start/End: Complemental strand, 36635364 - 36635310
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||| |||||| | ||||||||||||||||| | |||||| ||||||||||||    
T  36635364 tacactgaattatgtgattttctcaaattattagtggtgttggcgtgtcagtgtc 36635310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 373
Target Start/End: Original strand, 50848311 - 50848361
Alignment:
Q  323 acacctatgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    ||||||| || |||||| |||||||||||||| ||||||||||||| ||||    
T  50848311 acacctacgattacactgaattatatcattttttcaaattattattggtgt 50848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 9299083 - 9299132
Alignment:
Q  344 tatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    ||||| |||||||||||||||||  | ||||| |||||||||||||||||    
T  9299083 tatattattttctcaaattattagcaatgttggcgtgtcagtgtctatgt 9299132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 387
Target Start/End: Original strand, 34515881 - 34515946
Alignment:
Q  322 gacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    ||||||||||  |||||| |||||| |||||||||  |||||||||  |||| |||||||||||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgt 34515946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 55941011 - 55941076
Alignment:
Q  323 acacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||| ||||| || |||||||||| | ||||||| ||||||||||| |||||||||| | ||||||    
T  55941011 acacatatgattatactaaattatgtaattttcttaaattattattggtgttgacgtataagtgtc 55941076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 25216905 - 25216941
Alignment:
Q  350 attttctcaaattattattagtgttgacgtgtcagtg 386  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  25216905 atttcctcaaattattattagtgttggcgtgtcagtg 25216941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 39507127 - 39507171
Alignment:
Q  323 acacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||| |||||| |||||||||||||||  ||||||||||    
T  39507127 acacctatgattacacttaattatatcattttcataaattattat 39507171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 47191001 - 47191045
Alignment:
Q  323 acacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||| || ||||||||||||| |||||||| |||||||||||    
T  47191001 acacctaggattacactaaattatgtcattttcgcaaattattat 47191045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 42004937 - 42004999
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||    
T  42004937 gtgtccgacaccgacacaacacctatgattacactaaattatgtcattttctcaaattattat 42004999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 387
Target Start/End: Original strand, 6936390 - 6936472
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    ||||||||||| |||||||||||||||| |||||| |||||| ||||||||||| ||||||||  ||||||| |||| |||||    
T  6936390 gtgtccgacacagacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttgatgtgttagtgt 6936472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 317 - 393
Target Start/End: Original strand, 22794080 - 22794156
Alignment:
Q  317 gacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    |||||||||||||| | ||||||  ||||| ||||||| ||||||||||||  ||||||||||||||||||||||||    
T  22794080 gacacgacacctataattacactgtattatgtcattttttcaaattattatccgtgttgacgtgtcagtgtctatgt 22794156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 6574047 - 6573999
Alignment:
Q  316 cgacacgacacctatgactacactaaattatatcattttctcaaattat 364  Q
    |||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattat 6573999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 40747763 - 40747825
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||| ||| ||||||||| | |||| | |||||| ||||||||||||||||||||    
T  40747763 gtgtccgacaccaacatgacacctataattacattgaattatgtcattttctcaaattattat 40747825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 388
Target Start/End: Original strand, 41017423 - 41017477
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||| |||||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  41017423 tacattaaattatgtcattttctcaaattattactagggttgacgtgtcaatgtc 41017477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 367
Target Start/End: Complemental strand, 23440050 - 23440017
Alignment:
Q  334 tacactaaattatatcattttctcaaattattat 367  Q
    ||||||||||||||||||||||||||||||||||    
T  23440050 tacactaaattatatcattttctcaaattattat 23440017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 387
Target Start/End: Complemental strand, 43328507 - 43328454
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgt 387  Q
    |||| |||||||| |||||||||||||||||||| |||||  ||||||||||||    
T  43328507 tacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagtgt 43328454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 36878514 - 36878442
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtctatgt 393  Q
    |||||||||| | |||||| |||||| | |||||||||||||||||   |||| | |||||||||||||||||    
T  36878514 cgacacctataattacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtctatgt 36878442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 32900010 - 32899931
Alignment:
Q  249 ctatgaagcaagtacattccacggattaggggtgccctagtgttagacacgtgtcagtgtccgacaccgacacgacacct 328  Q
    |||||||||||| ||| ||| ||||||||||||| ||  ||||  |||| | ||| ||||||||||||||||| ||||||    
T  32900010 ctatgaagcaaggacaatcctcggattaggggtgtcccggtgtccgacatgcgtcggtgtccgacaccgacacaacacct 32899931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 39101179 - 39101234
Alignment:
Q  312 acaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||| ||||||||||| | |||||| |||||| | ||||||||||||||||||    
T  39101179 acaccgaaacgacacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 11634118 - 11634176
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||  ||||||||||||||| |||| |||||||| |  |||||||||||||||||    
T  11634118 ccgacactcacacgacacctatgattacattaaattatgttgttttctcaaattattat 11634176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 3921700 - 3921659
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtc 382  Q
    |||||| |||||||||||||||||||||  ||||||||||||    
T  3921700 aattatgtcattttctcaaattattattgatgttgacgtgtc 3921659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 385
Target Start/End: Complemental strand, 2445903 - 2445859
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagt 385  Q
    |||||| ||||||||||||||||| ||| ||||||| ||||||||    
T  2445903 aattatgtcattttctcaaattatcattggtgttgaagtgtcagt 2445859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 39130773 - 39130825
Alignment:
Q  321 cgacacctatgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    |||||| ||| | ||||||||||||||| ||||||| ||||||||| ||||||    
T  39130773 cgacacatataattacactaaattatataattttctaaaattattaatagtgt 39130825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 48415728 - 48415764
Alignment:
Q  318 acacgacacctatgactacactaaattatatcatttt 354  Q
    |||||||| |||||| |||||||||||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttt 48415764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 309 - 373
Target Start/End: Complemental strand, 13845299 - 13845235
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||    
T  13845299 ccgacacagacacgacacctatgattactctaaattatatcattttctcaaattattatttgtgt 13845235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 39820488 - 39820436
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39820488 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 35431140 - 35431192
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  35431140 ccgacacgacacctatgattacactaaaatatgtcattttctcaaattattat 35431192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 13009490 - 13009545
Alignment:
Q  312 acaccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    ||||||||||||||| ||||| |||||||||||||||  |||||||||||||||||    
T  13009490 acaccgacacgacacttatgattacactaaattatattgttttctcaaattattat 13009545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 26915230 - 26915313
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||||||||||||||| | ||| |||| |||||||| ||||||||||||| | ||||  |||| |||||||| |||||    
T  26915230 gtgtccgacaccgacacgacacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtc 26915313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 40064014 - 40063952
Alignment:
Q  311 gacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgt 373  Q
    |||||||||||||| ||||||| |||| | |||||| ||||||||||||||||||||| ||||    
T  40064014 gacaccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgt 40063952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 388
Target Start/End: Complemental strand, 44067580 - 44067502
Alignment:
Q  310 cgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||||||||||||| ||| | ||||||  ||||| ||||||||||||||||||||  |||| | ||||||||||||    
T  44067580 cgacaccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgtc 44067502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 1676771 - 1676719
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||| ||||||||| ||| |||||||| |||||||||||    
T  1676771 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattat 1676719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 3658216 - 3658133
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||||||||| | ||||||||||||||| |||||| || || || ||||||||||||||||||  |||| || ||||| |||||    
T  3658216 gtgtccgacatcaacacgacacctatgattacactgaactacattattttctcaaattattatccgtgtcgatgtgtcggtgtc 3658133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 14227255 - 14227210
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtg 386  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||    
T  14227255 aattatgttattttctcaaattattattggtgttgacgtgtcagtg 14227210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 11815862 - 11815815
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||| |||||||||||||||||||| ||||  |||||||||||||    
T  11815862 aattataacattttctcaaattattattggtgtcaacgtgtcagtgtc 11815815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 368
Target Start/End: Original strand, 28883880 - 28883931
Alignment:
Q  317 gacacgacacctatgactacactaaattatatcattttctcaaattattatt 368  Q
    |||| ||||||||||| | |||| |||||| |||||||||||||||||||||    
T  28883880 gacaagacacctatgattccactgaattatgtcattttctcaaattattatt 28883931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 366
Target Start/End: Original strand, 12559119 - 12559157
Alignment:
Q  328 tatgactacactaaattatatcattttctcaaattatta 366  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  12559119 tatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 391
Target Start/End: Original strand, 10170421 - 10170462
Alignment:
Q  350 attttctcaaattattattagtgttgacgtgtcagtgtctat 391  Q
    ||||||||||||||||||| ||||||||||| || |||||||    
T  10170421 attttctcaaattattattggtgttgacgtgccaatgtctat 10170462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 382
Target Start/End: Original strand, 14513164 - 14513241
Alignment:
Q  305 gtgtccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtc 382  Q
    ||||| ||||||||||| | | |||||| ||| || |||||| | |||||||||||||||||||  ||||| ||||||    
T  14513164 gtgtctgacaccgacaccaaatctatgattacgctgaattatgtaattttctcaaattattatttttgttggcgtgtc 14513241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Original strand, 2648274 - 2648314
Alignment:
Q  341 aattatatcattttctcaaattattattagtgttgacgtgt 381  Q
    |||||| | ||||||||||||||||||| ||||||||||||    
T  2648274 aattatgttattttctcaaattattattggtgttgacgtgt 2648314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 34201072 - 34201104
Alignment:
Q  341 aattatatcattttctcaaattattattagtgt 373  Q
    |||||| ||||||||||||||||||||||||||    
T  34201072 aattatgtcattttctcaaattattattagtgt 34201104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 2008 - 1956
Alignment:
Q  315 ccgacacgacacctatgactacactaaattatatcattttctcaaattattat 367  Q
    |||||||||||||||||| ||||||||| ||| |||||||| |||||||||||    
T  2008 ccgacacgacacctatgattacactaaaatatgtcattttcacaaattattat 1956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 8047 - 8126
Alignment:
Q  309 ccgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    |||| |||||||||| |||||||  |||||| |||||| ||||||||||||||||||||  || | |||||||| |||||    
T  8047 ccgaaaccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgtatcgacgtgtcggtgtc 8126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 389
Target Start/End: Complemental strand, 90883 - 90828
Alignment:
Q  334 tacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtct 389  Q
    |||||| |||||||| ||||||||||||||||| | ||||||  ||||||||||||    
T  90883 tacactgaattatatgattttctcaaattattaatggtgttggtgtgtcagtgtct 90828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 56974 - 56932
Alignment:
Q  322 gacacctatgactacactaaattatatcattttctcaaattat 364  Q
    ||||| ||||| |||||| ||||||||||||||||||||||||    
T  56974 gacacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 388
Target Start/End: Original strand, 225263 - 225341
Alignment:
Q  310 cgacaccgacacgacacctatgactacactaaattatatcattttctcaaattattattagtgttgacgtgtcagtgtc 388  Q
    ||||||| ||||||||| ||| | |||| |  ||||| ||||||||||||||||||||  |||| | ||||||||||||    
T  225263 cgacaccaacacgacacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtc 225341  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 68249 - 68293
Alignment:
Q  322 gacacctatgactacactaaattatatcattttctcaaattatta 366  Q
    ||||||||| | || |||||||||||| |||||||||||||||||    
T  68249 gacacctataattatactaaattatatgattttctcaaattatta 68293  T

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