View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_high_27 (Length: 346)

Name: NF8986_high_27
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_high_27
NF8986_high_27
[»] chr4 (44 HSPs)
chr4 (168-329)||(52929979-52930147)
chr4 (1-101)||(50052431-50052531)
chr4 (1-98)||(11511465-11511562)
chr4 (1-98)||(6034044-6034141)
chr4 (5-98)||(50526178-50526271)
chr4 (1-100)||(48183052-48183151)
chr4 (1-98)||(31910192-31910289)
chr4 (1-98)||(40574779-40574876)
chr4 (1-101)||(480450-480550)
chr4 (1-101)||(42044370-42044470)
chr4 (1-98)||(41236347-41236444)
chr4 (1-100)||(29547962-29548061)
chr4 (1-100)||(55475189-55475288)
chr4 (1-102)||(29239882-29239983)
chr4 (1-98)||(54473536-54473633)
chr4 (1-101)||(19670719-19670819)
chr4 (4-100)||(24995113-24995209)
chr4 (4-100)||(48647732-48647828)
chr4 (1-100)||(29977883-29977982)
chr4 (12-98)||(8343177-8343263)
chr4 (1-99)||(29234248-29234346)
chr4 (1-98)||(3481654-3481751)
chr4 (1-99)||(47986207-47986305)
chr4 (1-99)||(50813895-50813993)
chr4 (103-151)||(52930143-52930191)
chr4 (1-100)||(32766956-32767055)
chr4 (1-60)||(41823920-41823979)
chr4 (1-78)||(17983746-17983823)
chr4 (1-100)||(23608233-23608332)
chr4 (25-94)||(18769113-18769182)
chr4 (1-94)||(53352569-53352661)
chr4 (19-98)||(55079735-55079814)
chr4 (1-99)||(28480271-28480369)
chr4 (1-99)||(28481146-28481244)
chr4 (1-99)||(28482021-28482119)
chr4 (9-71)||(33703245-33703306)
chr4 (25-99)||(44536773-44536846)
chr4 (27-100)||(47104542-47104615)
chr4 (28-98)||(18924525-18924595)
chr4 (1-90)||(29589743-29589831)
chr4 (27-72)||(48463384-48463428)
chr4 (28-72)||(27893776-27893819)
chr4 (28-72)||(31681025-31681068)
chr4 (28-72)||(55966280-55966323)
[»] chr1 (40 HSPs)
chr1 (1-101)||(32813244-32813344)
chr1 (1-99)||(51898686-51898784)
chr1 (1-102)||(2581911-2582012)
chr1 (1-99)||(37926441-37926539)
chr1 (1-98)||(26440734-26440831)
chr1 (1-100)||(38632324-38632423)
chr1 (1-98)||(9474879-9474976)
chr1 (1-98)||(27564738-27564835)
chr1 (1-98)||(37649198-37649295)
chr1 (1-98)||(47452323-47452420)
chr1 (1-98)||(3000319-3000416)
chr1 (1-98)||(48716285-48716382)
chr1 (1-101)||(38595151-38595251)
chr1 (1-93)||(44548379-44548471)
chr1 (1-98)||(50591003-50591100)
chr1 (1-101)||(5959003-5959103)
chr1 (1-101)||(8346391-8346491)
chr1 (4-98)||(6260870-6260964)
chr1 (28-102)||(23597121-23597195)
chr1 (1-99)||(41758804-41758902)
chr1 (1-99)||(50630457-50630555)
chr1 (1-98)||(41608496-41608593)
chr1 (1-100)||(49811530-49811629)
chr1 (8-98)||(47748443-47748532)
chr1 (1-98)||(43132-43229)
chr1 (4-100)||(45044566-45044662)
chr1 (1-93)||(26274437-26274529)
chr1 (1-97)||(44453980-44454076)
chr1 (5-93)||(11152385-11152472)
chr1 (4-68)||(13414791-13414855)
chr1 (9-72)||(750239-750301)
chr1 (28-99)||(7740732-7740803)
chr1 (4-71)||(48489328-48489394)
chr1 (1-98)||(3302536-3302633)
chr1 (28-72)||(5489899-5489942)
chr1 (28-72)||(43571020-43571063)
chr1 (28-72)||(48498896-48498939)
chr1 (19-72)||(50448194-50448246)
chr1 (28-72)||(4401451-4401494)
chr1 (28-72)||(7447948-7447991)
[»] chr5 (32 HSPs)
chr5 (1-98)||(26720516-26720613)
chr5 (1-98)||(26990265-26990362)
chr5 (1-98)||(28177775-28177872)
chr5 (1-99)||(2740273-2740371)
chr5 (1-98)||(14831814-14831911)
chr5 (4-99)||(6679697-6679792)
chr5 (1-98)||(40145407-40145504)
chr5 (1-93)||(18520887-18520979)
chr5 (2-100)||(15409614-15409712)
chr5 (1-98)||(33149641-33149738)
chr5 (1-101)||(31008985-31009085)
chr5 (1-100)||(36732945-36733044)
chr5 (1-99)||(2252171-2252269)
chr5 (1-98)||(35785199-35785296)
chr5 (1-98)||(35943895-35943992)
chr5 (1-101)||(3921268-3921368)
chr5 (1-101)||(13811649-13811749)
chr5 (1-98)||(42414305-42414402)
chr5 (1-98)||(6260004-6260101)
chr5 (29-98)||(33825355-33825424)
chr5 (7-99)||(41470425-41470517)
chr5 (1-100)||(39688900-39688999)
chr5 (39-93)||(36875644-36875698)
chr5 (1-98)||(20073519-20073616)
chr5 (35-94)||(10356638-10356698)
chr5 (29-93)||(16327906-16327970)
chr5 (1-101)||(38296200-38296300)
chr5 (1-100)||(9603811-9603910)
chr5 (1-75)||(39557520-39557594)
chr5 (59-95)||(21370017-21370053)
chr5 (28-72)||(5257118-5257161)
chr5 (27-71)||(38470701-38470744)
[»] chr3 (44 HSPs)
chr3 (1-98)||(26141535-26141632)
chr3 (1-101)||(49607411-49607511)
chr3 (1-100)||(41189767-41189866)
chr3 (1-98)||(20764918-20765015)
chr3 (1-98)||(51419363-51419460)
chr3 (1-98)||(53982011-53982108)
chr3 (1-98)||(33644200-33644297)
chr3 (1-94)||(52629304-52629397)
chr3 (1-101)||(11347925-11348025)
chr3 (1-93)||(48587094-48587186)
chr3 (1-99)||(17470404-17470502)
chr3 (1-98)||(47531865-47531962)
chr3 (4-95)||(26754698-26754789)
chr3 (1-100)||(27714894-27714993)
chr3 (1-100)||(33118854-33118953)
chr3 (1-100)||(54868898-54868997)
chr3 (1-98)||(8076393-8076490)
chr3 (1-98)||(14623842-14623939)
chr3 (24-100)||(11095379-11095455)
chr3 (4-100)||(11907369-11907465)
chr3 (1-93)||(31456694-31456786)
chr3 (1-99)||(24699957-24700055)
chr3 (25-99)||(35536625-35536699)
chr3 (1-93)||(13898058-13898150)
chr3 (29-99)||(8956761-8956831)
chr3 (8-98)||(45058563-45058652)
chr3 (13-102)||(36707439-36707528)
chr3 (4-99)||(48375712-48375807)
chr3 (28-100)||(35965804-35965876)
chr3 (1-99)||(9562998-9563096)
chr3 (4-93)||(30801739-30801828)
chr3 (1-76)||(36331332-36331407)
chr3 (1-93)||(25407150-25407243)
chr3 (28-99)||(25395363-25395434)
chr3 (12-95)||(42823114-42823197)
chr3 (4-98)||(41080709-41080801)
chr3 (27-99)||(36331407-36331479)
chr3 (25-100)||(35093583-35093658)
chr3 (33-100)||(1758491-1758560)
chr3 (62-99)||(21746247-21746284)
chr3 (28-72)||(42100811-42100854)
chr3 (17-89)||(43745755-43745827)
chr3 (28-72)||(46941176-46941219)
chr3 (28-72)||(53581792-53581835)
[»] chr6 (26 HSPs)
chr6 (1-99)||(31976247-31976345)
chr6 (1-91)||(32869685-32869775)
chr6 (1-93)||(22880661-22880753)
chr6 (1-99)||(11427615-11427715)
chr6 (1-98)||(17598554-17598651)
chr6 (1-101)||(31110764-31110862)
chr6 (1-101)||(30341363-30341463)
chr6 (1-100)||(15990045-15990144)
chr6 (1-98)||(15508027-15508124)
chr6 (1-98)||(29857827-29857924)
chr6 (1-98)||(4231548-4231645)
chr6 (1-102)||(6209468-6209569)
chr6 (33-98)||(31953065-31953130)
chr6 (1-93)||(28536491-28536581)
chr6 (1-86)||(31109403-31109488)
chr6 (1-93)||(23128130-23128222)
chr6 (9-101)||(15832574-15832666)
chr6 (1-91)||(946383-946473)
chr6 (28-101)||(12732479-12732552)
chr6 (4-55)||(30870057-30870108)
chr6 (28-94)||(9379742-9379808)
chr6 (28-72)||(3213523-3213566)
chr6 (28-72)||(21293611-21293654)
chr6 (64-99)||(22422084-22422119)
chr6 (15-72)||(7367659-7367715)
chr6 (28-72)||(26669943-26669986)
[»] chr2 (39 HSPs)
chr2 (1-98)||(40613905-40614002)
chr2 (1-101)||(42257190-42257290)
chr2 (1-99)||(5574491-5574589)
chr2 (1-101)||(38273145-38273245)
chr2 (1-98)||(17473020-17473117)
chr2 (1-93)||(28863460-28863552)
chr2 (1-101)||(33436103-33436203)
chr2 (1-100)||(9058478-9058577)
chr2 (1-100)||(30915461-30915560)
chr2 (1-100)||(10249385-10249484)
chr2 (1-99)||(7465738-7465836)
chr2 (1-99)||(32505651-32505749)
chr2 (1-99)||(36168835-36168933)
chr2 (1-98)||(13438343-13438440)
chr2 (1-98)||(28381658-28381755)
chr2 (1-101)||(20700812-20700912)
chr2 (1-99)||(2533123-2533220)
chr2 (1-98)||(40701478-40701575)
chr2 (1-93)||(19930823-19930915)
chr2 (1-101)||(45097738-45097838)
chr2 (29-99)||(33436210-33436280)
chr2 (1-98)||(4060685-4060782)
chr2 (4-101)||(26891510-26891607)
chr2 (1-98)||(27864704-27864801)
chr2 (19-108)||(38882835-38882923)
chr2 (1-98)||(43490121-43490218)
chr2 (1-98)||(38732354-38732451)
chr2 (4-98)||(17820010-17820104)
chr2 (1-78)||(2997490-2997567)
chr2 (28-100)||(15428770-15428842)
chr2 (30-100)||(17823782-17823852)
chr2 (1-101)||(13365348-13365450)
chr2 (1-93)||(41575142-41575235)
chr2 (4-92)||(3439985-3440073)
chr2 (27-97)||(44151924-44151995)
chr2 (4-44)||(3154197-3154237)
chr2 (4-54)||(3737987-3738037)
chr2 (28-72)||(16096871-16096914)
chr2 (28-72)||(42849793-42849836)
[»] chr7 (41 HSPs)
chr7 (4-98)||(46374808-46374902)
chr7 (1-97)||(35522877-35522973)
chr7 (1-99)||(3434561-3434659)
chr7 (6-99)||(46033809-46033902)
chr7 (1-100)||(8080386-8080485)
chr7 (1-100)||(7389387-7389486)
chr7 (1-100)||(19436190-19436289)
chr7 (1-98)||(19329842-19329939)
chr7 (1-93)||(3784000-3784092)
chr7 (7-99)||(26296643-26296735)
chr7 (1-101)||(38837214-38837314)
chr7 (1-99)||(36361916-36362014)
chr7 (1-98)||(38267040-38267137)
chr7 (1-102)||(40957703-40957804)
chr7 (4-104)||(21234395-21234495)
chr7 (1-98)||(31735884-31735974)
chr7 (1-99)||(36362025-36362123)
chr7 (1-98)||(35137533-35137630)
chr7 (1-93)||(3694372-3694464)
chr7 (1-98)||(8238212-8238310)
chr7 (1-99)||(22343360-22343458)
chr7 (1-99)||(41915740-41915838)
chr7 (1-98)||(4999517-4999614)
chr7 (1-101)||(7727903-7728003)
chr7 (1-100)||(38044195-38044294)
chr7 (9-98)||(32564437-32564526)
chr7 (1-101)||(18207177-18207276)
chr7 (1-93)||(32951496-32951588)
chr7 (4-100)||(36208171-36208267)
chr7 (9-98)||(40846124-40846213)
chr7 (37-101)||(35468894-35468958)
chr7 (28-98)||(39255953-39256023)
chr7 (6-98)||(41423682-41423774)
chr7 (32-101)||(10343597-10343666)
chr7 (49-101)||(11044185-11044237)
chr7 (30-101)||(45223039-45223110)
chr7 (3-68)||(16374829-16374894)
chr7 (28-72)||(44326301-44326344)
chr7 (9-72)||(26898336-26898398)
chr7 (4-64)||(27744315-27744375)
chr7 (28-72)||(32029751-32029794)
[»] chr8 (40 HSPs)
chr8 (1-98)||(43414584-43414681)
chr8 (1-99)||(37038478-37038576)
chr8 (1-100)||(4854866-4854965)
chr8 (1-96)||(10621090-10621185)
chr8 (1-98)||(15048185-15048281)
chr8 (1-93)||(5957835-5957927)
chr8 (1-107)||(12831038-12831144)
chr8 (1-98)||(15197333-15197430)
chr8 (1-98)||(34012299-34012396)
chr8 (3-98)||(504126-504221)
chr8 (1-104)||(10284634-10284737)
chr8 (1-100)||(14547920-14548019)
chr8 (1-98)||(1179943-1180040)
chr8 (1-101)||(16383374-16383474)
chr8 (1-99)||(44507090-44507188)
chr8 (1-98)||(23122600-23122697)
chr8 (1-98)||(40423946-40424043)
chr8 (1-100)||(34307214-34307313)
chr8 (28-98)||(20074964-20075034)
chr8 (1-98)||(30479477-30479574)
chr8 (1-101)||(16056404-16056504)
chr8 (1-100)||(24307796-24307895)
chr8 (1-78)||(8841435-8841512)
chr8 (1-99)||(32032724-32032821)
chr8 (4-100)||(15258935-15259031)
chr8 (35-101)||(24307626-24307692)
chr8 (1-100)||(42221513-42221612)
chr8 (33-99)||(17443824-17443890)
chr8 (1-54)||(9122229-9122282)
chr8 (28-72)||(20148883-20148926)
chr8 (9-72)||(2547100-2547162)
chr8 (19-98)||(14055613-14055692)
chr8 (9-72)||(29705466-29705528)
chr8 (59-93)||(9122200-9122234)
chr8 (61-99)||(25838196-25838234)
chr8 (4-98)||(38229429-38229522)
chr8 (28-69)||(3743894-3743934)
chr8 (28-72)||(26125757-26125800)
chr8 (28-72)||(29800884-29800927)
chr8 (28-72)||(30660676-30660719)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-98)||(932-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-98)||(932-1029)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-101)||(10112-10212)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-98)||(4029-4126)
[»] scaffold0018 (1 HSPs)
scaffold0018 (9-78)||(152518-152587)
[»] scaffold0316 (1 HSPs)
scaffold0316 (4-98)||(17058-17148)
[»] scaffold0110 (1 HSPs)
scaffold0110 (8-98)||(8873-8963)
[»] scaffold0119 (1 HSPs)
scaffold0119 (28-72)||(808-851)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 168 - 329
Target Start/End: Complemental strand, 52930147 - 52929979
Alignment:
Q  168 accaaaatgaaacaggttaagggatcagcattgatttagttaatgtaagaacaaagcaatagtaaaacatttatattggc----cattcaacacgaaaga 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    ||||||||||||||||    
T  52930147 accaaaatgaaacaggttaagggatcagcattgatttagttaatgtaagaacaaagcaatagt-aaacatttatattggccattcattcaacacgaaaga 52930049  T
Q  264 tcagttcacggcaaagaattattaacttccttcttac----acagacagacagacaaaccctggaaaaac 329  Q
    ||| |||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  52930048 tcaattcacggcaaagaattattaacttccttcttacacagacagacagacagacaaaccctggaaaaac 52929979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 50052431 - 50052531
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  50052431 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctt 50052530  T
Q  101 t 101  Q
    |    
T  50052531 t 50052531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11511465 - 11511562
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  11511465 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 6034141 - 6034044
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| ||||| || |||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  6034141 aagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 98
Target Start/End: Original strand, 50526178 - 50526271
Alignment:
Q  5 gtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  50526178 gtgcttgtgcggaatccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactc 50526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 48183052 - 48183151
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||    
T  48183052 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactctt 48183151  T

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Target: chr4; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 31910289 - 31910192
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||||||| | | ||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||    
T  31910289 aagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtatcataactc 31910192  T

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Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40574876 - 40574779
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||| ||||||||||||  |  |||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  40574876 aagtgtgcttgttcgggatccatgtagcagcgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

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Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 480450 - 480550
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||| |||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||| ||||||    
T  480450 aagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactctt 480549  T
Q  101 t 101  Q
    |    
T  480550 t 480550  T

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Target: chr4; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 42044370 - 42044470
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||  |||| ||||||||||||||||| |||||||||||||| ||||||    
T  42044370 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactctt 42044469  T
Q  101 t 101  Q
    |    
T  42044470 t 42044470  T

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Target: chr4; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 41236444 - 41236347
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||| ||| ||| ||||||||||||||||||| |||||||||||||| ||||    
T  41236444 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 41236347  T

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Target: chr4; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 29547962 - 29548061
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| ||| |||||||||||| || |||| |||||||||||| ||||||||| || || ||||||||||||||||||||| |||||||||||||||||    
T  29547962 aagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctt 29548061  T

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Target: chr4; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 55475288 - 55475189
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| ||| ||| || ||||| || |||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  55475288 aagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtttatgtatcataactctt 55475189  T

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Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 29239983 - 29239882
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||| ||| |||| ||||| |||||| |||||||| ||||| ||| ||| ||||||||||||||||||| |||||||||||||| ||||||    
T  29239983 aagtgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactctt 29239884  T
Q  101 ta 102  Q
    ||    
T  29239883 ta 29239882  T

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Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 54473536 - 54473633
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||| ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  54473536 aagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtatcattactc 54473633  T

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Target: chr4; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 19670719 - 19670819
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| |||| |||| || |||||||||||||||||||| ||| |||||||||||||||||    
T  19670719 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 19670818  T
Q  101 t 101  Q
    |    
T  19670819 t 19670819  T

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Target: chr4; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 24995113 - 24995209
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||||||||| |||||||||||||||| |||||| |||| || |||||| ||||||    
T  24995113 tgtgcttgtgcggggtccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaagggtgtccatatatcattactctt 24995209  T

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Target: chr4; HSP #18
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 48647732 - 48647828
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||  |||| |||||||||||| |||||||||||||||||||||  |||||||||  |||||||||||| ||||| |||||||||||    
T  48647732 tgtgcttgtgcggagtccacgtgaccacgtgttagatttttatgtgggtgttaagaggtgtattgttacctaaggatgtttatgtgtcataactctt 48647828  T

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Target: chr4; HSP #19
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 29977982 - 29977883
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||| ||| ||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||| || | | |||||||||| ||||||    
T  29977982 aagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgttaaggggtgtattgccacctatggttctgtatgtatcattactctt 29977883  T

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Target: chr4; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 8343177 - 8343263
Alignment:
Q  12 tgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| ||||| || |||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||| |||||||||||||||    
T  8343177 tgcggggtccatatggccacatgtcagatttttatgtaggtgtcaaaggatgtattgccacctaaggatgtttatgtatcataactc 8343263  T

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Target: chr4; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29234248 - 29234346
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||  ||| | |||||||||||||||| |||||| |||||||||||||| |||||    
T  29234248 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgaaggtatcaaagggtgtattgccatctaagggtgtctatgtatcattactct 29234346  T

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Target: chr4; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3481751 - 3481654
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||| ||| |||| ||||| | ||||||||||||| ||||||||| |||| |||||||||||||||| | |||||||||||||| ||||    
T  3481751 aagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtatcattactc 3481654  T

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Target: chr4; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47986305 - 47986207
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||| ||| || || ||||||||||||||||| ||| ||||||||||||||||    
T  47986305 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgccacctaagggtgtttatgtatcataactct 47986207  T

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Target: chr4; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 50813895 - 50813993
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||| |||||||||| | ||| ||||||| |||||||||||| ||||||||| || ||||||||| |||||||||  ||| ||||||||||||||||    
T  50813895 aagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattaccacctaagagtgtttatgtatcataactct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 52930191 - 52930143
Alignment:
Q  103 gaattaatggttaacgttttaaaaagtaataaggtttaaggtgaaccaa 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52930191 gaattaatggttaacgttttaaaaagtaataaggtttaaggtgaaccaa 52930143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32767055 - 32766956
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| ||||||| || ||||| || |||| |||||||||||| | ||||||| || |||||||||||||||||||  ||| |||||||||||||||||    
T  32767055 aagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatgggtgtcaaggggtgtattgccacctaagagtgtttatgtatcataactctt 32766956  T

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Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41823979 - 41823920
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagg 60  Q
    ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||    
T  41823979 aagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgttaaagg 41823920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 17983746 - 17983823
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagg 78  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  17983746 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 17983823  T

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Target: chr4; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 23608332 - 23608233
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||| ||  | || ||||| ||||||||||||||| ||||||||| ||| ||||||||| || |||||| ||||||| |||||| ||||||    
T  23608332 aagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactctt 23608233  T

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Target: chr4; HSP #30
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 18769182 - 18769113
Alignment:
Q  25 tgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 94  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |  || ||||||||| |||||||||||    
T  18769182 tgaccacgtgtcagatttttgtgtgggtgttagagggtgtatgggtacataaggatgtttatgtatcata 18769113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 53352569 - 53352661
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 94  Q
    |||| |||||||||||| ||||  | || ||||||||||||||| ||| ||||||||||  ||||||| ||||||||| |||||||||||||||    
T  53352569 aagtatgcttgtgcggggtccacttaactacgtgtcagatttttgtgtaggtgttaaagaatgtattg-cacctaagggtgtctatgtatcata 53352661  T

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Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 55079735 - 55079814
Alignment:
Q  19 tccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||| || |||| |||||||||||| | ||||||| ||  ||||||||||||||||||| ||| |||||||||||||||    
T  55079735 tccatatggccacatgtcagatttttgtatgggtgtcaagaggtgtattgccacctaagggtgtttatgtatcataactc 55079814  T

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Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28480271 - 28480369
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||| ||||| ||| ||||  |||| || |||||||||||| |||| |||||||   |||||||| ||||||||| ||||||||||| ||||||||    
T  28480271 aagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataactct 28480369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28481146 - 28481244
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||| ||||| ||| ||||  |||| || |||||||||||| |||| |||||||   |||||||| ||||||||| ||||||||||| ||||||||    
T  28481146 aagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataactct 28481244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 28482021 - 28482119
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||| ||||| ||| ||||  |||| || |||||||||||| |||| |||||||   |||||||| ||||||||| ||||||||||| ||||||||    
T  28482021 aagtgtgtttgtgtggggtccacatgactacatgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtattataactct 28482119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 33703245 - 33703306
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgcca 71  Q
    |||||||||||||| ||  |||||||||||| |||| |||||||| |||||||||||||||||    
T  33703245 ttgtgcgggatccaagttgccacgtgtcagaattttgtgtgggtg-taaagggtgtattgcca 33703306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 99
Target Start/End: Original strand, 44536773 - 44536846
Alignment:
Q  25 tgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||| |||||||||||| ||||| ||| || ||||||||||||||||||   ||| ||||||||||||||||    
T  44536773 tgaccacatgtcagatttttgtgtggatgtcaa-gggtgtattgccacctaaaagtgtttatgtatcataactct 44536846  T

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Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 100
Target Start/End: Complemental strand, 47104615 - 47104542
Alignment:
Q  27 accacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||| |||||| ||||||||| | || |||||||| || ||||| |||||||| |||||| ||||||    
T  47104615 accacgtgtcaaatttttgtgtgggtgtcagagagtgtattgtcatctaagaatgtctatatatcattactctt 47104542  T

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Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 18924525 - 18924595
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||| |||||||||||| ||||| | | || |||||||||||||||||||| | | |||| ||||||||||    
T  18924525 ccacatgtcagatttttgtgtggatatcaaggggtgtattgccacctaagggtatttatggatcataactc 18924595  T

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Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 29589743 - 29589831
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtat 90  Q
    |||||| |||||| ||| ||||| || |||| | |||||||||| ||||||||| || |||||||||| || |||||| ||| |||||||    
T  29589743 aagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgtcaaggggtgtattg-caactaagggtgtttatgtat 29589831  T

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Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 48463428 - 48463384
Alignment:
Q  27 accacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  48463428 accacatgtcagaattttatgtgggtg-taaagggtgtattgccac 48463384  T

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Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 27893819 - 27893776
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||    
T  27893819 ccacatgtcagaattttatgtgggtg-taaagggtgtattgccac 27893776  T

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Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 31681025 - 31681068
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||||||| |||| ||||||||||||||||||    
T  31681025 ccacgtgtcagaattttatgtaggtg-taaagggtgtattgccac 31681068  T

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Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 55966323 - 55966280
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||    
T  55966323 ccacctgtcagaattttatgtgggtg-taaagggtgtattgccac 55966280  T

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Target: chr1 (Bit Score: 93; Significance: 3e-45; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32813344 - 32813244
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813344 aagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 32813245  T
Q  101 t 101  Q
    |    
T  32813244 t 32813244  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 51898686 - 51898784
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  51898686 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 51898784  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 2582012 - 2581911
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  2582012 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 2581913  T
Q  101 ta 102  Q
    ||    
T  2581912 ta 2581911  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 37926441 - 37926539
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||    
T  37926441 aagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgccacctaaagatatctatgtatcataactct 37926539  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26440831 - 26440734
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||| ||||||    
T  26440831 aagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtattgtcatctaaggatgtctatctatcctaactc 26440734  T

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Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 38632324 - 38632423
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||| ||||||    
T  38632324 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 38632423  T

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Target: chr1; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 9474879 - 9474976
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| ||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  9474879 aagtgtgtttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

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Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27564738 - 27564835
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||  ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  27564738 aagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 27564835  T

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Target: chr1; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37649295 - 37649198
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||| || || ||||||||||||||||||||| ||||||||| |||| |||||||||||||||| |||||||||||||||| ||||    
T  37649295 aagtgtgcttgtgcggaattcacgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtatcattactc 37649198  T

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Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 47452323 - 47452420
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| ||||| |||||| |||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||| ||||    
T  47452323 aagtgtgcttgtgcgggatccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

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Target: chr1; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 3000416 - 3000319
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||| |||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||    
T  3000416 aagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

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Target: chr1; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 48716285 - 48716382
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||| ||| ||| ||||||||||||||||||| |||||||||||||| ||||    
T  48716285 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactc 48716382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38595251 - 38595151
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||| |||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| | ||| |||||||||| ||||||    
T  38595251 aagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactctt 38595152  T
Q  101 t 101  Q
    |    
T  38595151 t 38595151  T

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Target: chr1; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 44548379 - 44548471
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||| | ||| ||||||||||||||||| ||||||||||||||||    
T  44548379 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtatcat 44548471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 50591003 - 50591100
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| |||||||||||||||    
T  50591003 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5959003 - 5959103
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| ||||||| |||||||||||| ||||||||| ||  ||||||||||||| ||||| ||| |||||||||||||||||    
T  5959003 aagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagaggtgtattgccacttaagggtgtttatgtatcataactctt 5959102  T
Q  101 t 101  Q
    |    
T  5959103 t 5959103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 8346391 - 8346491
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||| || |||| ||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||| | || ||||||||||| ||||||    
T  8346391 aagtgtgcttgtgcagggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactctt 8346490  T
Q  101 t 101  Q
    |    
T  8346491 t 8346491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 6260964 - 6260870
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| |||||| |||| |||||||| ||| ||||||||||||||||||| | ||||||||| |||||||||||| ||||| |||||||||||    
T  6260964 tgtgcttatgcggggtccacgtgaccacatgttagatttttatgtgggtgttcaggggtgtattaccacctaaggatatctatctatcataactc 6260870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 23597121 - 23597195
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttta 102  Q
    ||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||||| ||||||||    
T  23597121 ccacgtgtcagatttttatgtgggtatcaaagagtgtattgccacctaatgatgtctatgtatcattactcttta 23597195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41758902 - 41758804
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||| ||||||||| |||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||  ||| | |||||||||||||| |||||    
T  41758902 aagtgtgtttgtgcggggtccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaatggtgtctatgtatcattactct 41758804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 50630555 - 50630457
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| |||||||   ||||| ||||||||||||||||| | |||||||||||| |||||    
T  50630555 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactct 50630457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 41608496 - 41608593
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| ||||| |||| ||||| || |||| |||||||||||| |||| |||| || |||||||||||||||||||||||| |||||||||||||||    
T  41608496 aagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtgagtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 41608593  T

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Target: chr1; HSP #23
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 49811530 - 49811629
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||  || || || | ||||||||||||||| ||||| ||| ||| ||||||||| ||||||||||||||||| |||||||||||||    
T  49811530 aagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctatctatcataactctt 49811629  T

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Target: chr1; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 47748532 - 47748443
Alignment:
Q  8 cttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||| || |||| |||||||||||||| |||||| | |||||||||||||||||||||| | | |||||||||||||||    
T  47748532 cttgtgcgggatccatatggccacatgtcagatttttatatgggtg-tcaagggtgtattgccacctaagggtatttatgtatcataactc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 43229 - 43132
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||  |||| ||||| ||||||||||||||| ||||||||| ||||| ||||||| | ||||||  |||||||||||||| ||||    
T  43229 aagtgtgcttgtgcggagtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtatcattactc 43132  T

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Target: chr1; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 45044566 - 45044662
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||| ||||||||| |||||||| | || |||||||||||| | ||||||| ||| ||||||||||||||||||||  | |||||||||||||||||    
T  45044566 tgtgtttgtgcggggtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgccacctaaggaaatgtatgtatcataactctt 45044662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 26274529 - 26274437
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||| ||||||| ||||||| ||||| | ||||||||||||| ||||| ||| ||| | ||||||||||| ||||| ||||||||||||||    
T  26274529 aagtgtacttgtgcaggatccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtatcat 26274437  T

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Target: chr1; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 44454076 - 44453980
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 97  Q
    ||||||||||||| |||||||| || ||||| |||||||||||| ||||||| | ||  | ||||||||||| ||| | ||||||||||||||||||    
T  44454076 aagtgtgcttgtgtgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaaaggtgtctatgtatcataact 44453980  T

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Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 11152385 - 11152472
Alignment:
Q  5 gtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||| || |  |||| ||||||||||||||| ||||| |||  |||||||||||||||||||||| ||||||||| ||||    
T  11152385 gtgcttgtgcggggtctacatgactacgtgtcagatttttgtgtggatgtcgaagggtgtattgccacctaagg-tgtctatgtttcat 11152472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 13414855 - 13414791
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattg 68  Q
    |||||||||| ||| |||| ||||| |||||| |||||||| ||||||||| |||||||||||||    
T  13414855 tgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattg 13414791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 750301 - 750239
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    ||||| ||| ||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||    
T  750301 ttgtgtggggtccatgttaccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 750239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 7740803 - 7740732
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||| |||||||||| ||||| || || ||||||| ||| ||||| |||| |||||||||||||||    
T  7740803 ccacgtgtcatatttttatgtaggtgtcaatggatgtattgtcacataaggttgtcaatgtatcataactct 7740732  T

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Target: chr1; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 48489394 - 48489328
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgcca 71  Q
    ||||||||||||||||||| |||||||| |||||||||||| ||||| || |  ||||||||||||||    
T  48489394 tgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatg-tccagggtgtattgcca 48489328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 3302536 - 3302633
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||  ||| ||||| |||  ||||||||||||||| |||||||||  | |  | ||||| ||||||||||||| |||||||||| ||||    
T  3302536 aagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtatcattactc 3302633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 5489899 - 5489942
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  5489899 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgccac 5489942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 43571063 - 43571020
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  43571063 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgccac 43571020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 48498939 - 48498896
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  48498939 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgccac 48498896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 50448246 - 50448194
Alignment:
Q  19 tccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||  |||||||||||| |||| |||||||| ||||||||||||||||||    
T  50448246 tccatgttgccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 50448194  T

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Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 4401451 - 4401494
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  4401451 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 4401494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 7447948 - 7447991
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  7447948 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 7447991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26720613 - 26720516
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720613 aagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26720516  T

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Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 26990362 - 26990265
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26990362 aagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26990265  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 28177872 - 28177775
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28177872 aagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2740371 - 2740273
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  2740371 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 2740273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 14831911 - 14831814
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||    
T  14831911 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 14831814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 6679792 - 6679697
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||| ||||||||| |||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  6679792 tgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactct 6679697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40145504 - 40145407
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  40145504 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtatcattactc 40145407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 18520887 - 18520979
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  18520887 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 18520979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 100
Target Start/End: Original strand, 15409614 - 15409712
Alignment:
Q  2 agtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||||| |||||||| | ||||||||||||||| ||||||||| ||||  ||||||| |||||||||||||||||||||||||||||||    
T  15409614 agtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtatcataactctt 15409712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 33149641 - 33149738
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| ||||| |||||||| |||||| ||||||||| |||||||||||| |||||||||| |||||||||||||| ||||    
T  33149641 aagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31009085 - 31008985
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| |||||||||  |||  ||||||| ||||||||||||| |||||||||||||||||    
T  31009085 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtatcataactctt 31008986  T
Q  101 t 101  Q
    |    
T  31008985 t 31008985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 36732945 - 36733044
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| | ||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||    
T  36732945 aagtgtgcttgtgcggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactctt 36733044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 2252171 - 2252269
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  2252171 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaaggatgtttatgtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35785296 - 35785199
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| |||||||||||||| || || ||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||    
T  35785296 aagtgtgattgtgcgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 35943895 - 35943992
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||| |||||||| || || ||||||||||||||| ||||||||| ||| | ||||||||||||||||| |||||||||||||||||||    
T  35943895 aagtgtgcttgtgtgggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3921268 - 3921368
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| |||||||||||||||||    
T  3921268 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 3921367  T
Q  101 t 101  Q
    |    
T  3921368 t 3921368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13811749 - 13811649
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||| |||||||||||| | ||||||    
T  13811749 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtatctttactctt 13811650  T
Q  101 t 101  Q
    |    
T  13811649 t 13811649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 42414305 - 42414402
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| ||||  |||| ||||||||||||||| ||||||||| ||||||||||||||||||||  | |||||||||||||| ||||    
T  42414305 aagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctactggtgtctatgtatcattactc 42414402  T

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Target: chr5; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 6260004 - 6260101
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| || | | |||||||||||| |||| ||||||||  |||||||||||||||||||||| |||||| || ||| |||||||||| ||||    
T  6260004 aagtgtgcttctgtgaggtccatgtgaccatgtgttagatttttgcgtgggtgttaaagggtgtattgtcacctatggttgtgtatgtatcattactc 6260101  T

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Target: chr5; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 33825355 - 33825424
Alignment:
Q  29 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||| ||||| ||||    
T  33825355 cacgtgtcagatttttatgtgggtgtcaaggagtgtattgccacctaagaatgtctatgcatcattactc 33825424  T

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Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 41470425 - 41470517
Alignment:
Q  7 gcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||  | ||||||| ||||||||||||||| | ||||||||||| || |||||    
T  41470425 gcttgtgcggggtccacgtgactacgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactct 41470517  T

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Target: chr5; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 39688900 - 39688999
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| ||| |||||| | ||| ||||||| | |||||||||| ||||||||| || || ||||||||||| ||||| ||| |||||||||||||||||    
T  39688900 aagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtgggtgtcaagggatgtattgccacttaagggtgtttatgtatcataactctt 39688999  T

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Target: chr5; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 36875644 - 36875698
Alignment:
Q  39 atttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  36875644 atttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

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Target: chr5; HSP #24
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20073519 - 20073616
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||| || |||| |||  ||||||  ||||||||||||| |||| ||||||||||||| || |||| ||||||||| |||||| ||||    
T  20073519 aagtgtgcttgtgcagggtccacgtggtcacgtgcaagatttttatgtgagtgtcaaagggtgtattgtcatctaatgatgtctatatatcattactc 20073616  T

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Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 10356698 - 10356638
Alignment:
Q  35 tcagatttttatgtgggtgttaaaggg-tgtattgccacctaaggatgtctatgtatcata 94  Q
    |||||||||| ||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  10356698 tcagatttttgtgtgggtgtcaatgggatgtattgccacctaaggatgtctatgtatcata 10356638  T

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Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 16327970 - 16327906
Alignment:
Q  29 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||||||||||||||||||||||| || || ||||||||||||||||||| | ||| ||||||    
T  16327970 cacgtgtcagatttttatgtgggtgtcaatggatgtattgccacctaaggatatttatctatcat 16327906  T

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Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38296300 - 38296200
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||  ||||||| ||  | ||||||| ||||||| ||||||| ||||  ||||||||| ||||||||   ||||||||||||||||||||    
T  38296300 aagtgtgcttgtgttggatccacgtagctacgtgtctgatttttgtgtgggtattaagaggtgtattgacacctaagatagtctatgtatcataactctt 38296201  T
Q  101 t 101  Q
    |    
T  38296200 t 38296200  T

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Target: chr5; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 9603910 - 9603811
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||| ||||  ||| ||||| |||||| ||||||||||||| ||| ||||| || | |||||||  ||||||||||||| |||||||||| ||||||    
T  9603910 aagtgtgattgtatggggtccatatgaccatgtgtcagatttttgtgtaggtgtgaatgagtgtattatcacctaaggatgtatatgtatcattactctt 9603811  T

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Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 39557520 - 39557594
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccaccta 75  Q
    ||||||| ||||  ||| ||||||||| |||||||||||||||| ||||| ||||||  |||||||| |||||||    
T  39557520 aagtgtgattgtatggggtccatgtgatcacgtgtcagatttttgtgtggatgttaagaggtgtattaccaccta 39557594  T

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Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 21370053 - 21370017
Alignment:
Q  59 gggtgtattgccacctaaggatgtctatgtatcataa 95  Q
    ||||||||| |||||||||||||||||||||||||||    
T  21370053 gggtgtattaccacctaaggatgtctatgtatcataa 21370017  T

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Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 5257118 - 5257161
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||    
T  5257118 ccacatgtcagaattttatgtgggtg-taaagggtgtattgccac 5257161  T

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Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 38470701 - 38470744
Alignment:
Q  27 accacgtgtcagatttttatgtgggtgttaaagggtgtattgcca 71  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||    
T  38470701 accacgtatcagaattttatgtgggtg-taaagggtgtattgcca 38470744  T

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Target: chr3 (Bit Score: 86; Significance: 5e-41; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 26141535 - 26141632
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26141535 aagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 26141632  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 49607511 - 49607411
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  49607511 aagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 49607412  T
Q  101 t 101  Q
    |    
T  49607411 t 49607411  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41189767 - 41189866
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||||||||||| ||| | ||||||||||||||||||||| |||||||||||||||||    
T  41189767 aagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgccacctaaggatgtatatgtatcataactctt 41189866  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 20764918 - 20765015
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  20764918 aagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaaggatgtctatgtctcataactc 20765015  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 51419363 - 51419460
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||    
T  51419363 aagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtatcataactc 51419460  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 53982108 - 53982011
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||    
T  53982108 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 53982011  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 33644297 - 33644200
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||| |||| |||||||||||||| ||||    
T  33644297 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtatcattactc 33644200  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 52629397 - 52629304
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 94  Q
    |||||||||||| |||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  52629397 aagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

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Target: chr3; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 11347925 - 11348025
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||| ||| || |||||||| ||||||||||||||||| ||||| ||| ||||| ||||||| |||||||||||||||||||||||||||||||    
T  11347925 aagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtatcataactctt 11348024  T
Q  101 t 101  Q
    |    
T  11348025 t 11348025  T

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Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 48587094 - 48587186
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||||||    
T  48587094 aagtgtacttgtgcgggatccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtatctatgtatcat 48587186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 17470502 - 17470404
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||||| |||||    
T  17470502 aagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactct 17470404  T

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Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 47531962 - 47531865
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| | ||| || |||||||||||||| || ||||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  47531962 aagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtggatgttaaaaggtgtattgccatctaaggatgtctatgtatcataactc 47531865  T

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Target: chr3; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 95
Target Start/End: Complemental strand, 26754789 - 26754698
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 95  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||| |||  |||||||||||||||||||||| |||||||| |||||||    
T  26754789 tgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatgaatcataa 26754698  T

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Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 27714894 - 27714993
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| ||||  |||| ||||||||||||||| ||||||||| |||||||||||| |||||||| | |||||||||||||| ||||||    
T  27714894 aagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaaggtgtctatgtatcattactctt 27714993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 33118854 - 33118953
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||| || || |||||||| ||||| |||||||| |||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  33118854 aagtgtgtttctgagggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactctt 33118953  T

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Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 54868898 - 54868997
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||| ||||||||| |||| || || ||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||||    
T  54868898 aagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactctt 54868997  T

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Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8076490 - 8076393
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||| |||||||||| |||||||||||| ||| |||||||||| ||||    
T  8076490 aagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

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Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 14623842 - 14623939
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||| | | ||||  ||| ||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  14623842 aagtgtgcttgtgtgaggtccacatgaacacatgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 11095379 - 11095455
Alignment:
Q  24 gtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  11095379 gtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 11095455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 11907465 - 11907369
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||| ||||| ||||||| |||||||||||| |||| ||||| | | |||||||| ||||||||| |||||||||||||||||||||    
T  11907465 tgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgttcaggtgtgtattgtcacctaagggtgtctatgtatcataactctt 11907369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31456786 - 31456694
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||||||| ||||  |||| ||||||||||||||| ||||||||| ||||||||||||||| |||| || ||||||||||||||    
T  31456786 aagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccgcctatgggtgtctatgtatcat 31456694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 24699957 - 24700055
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||| |||| | || |||| ||| ||||||| ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||    
T  24699957 aagtgtgtttgtacagggtccacgtggccacgtgccagatttttatgtgggtgtcaaaaggtgtattgccaactaaggatgtctatgtatcattactct 24700055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 35536699 - 35536625
Alignment:
Q  25 tgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||||||||||| |||||    
T  35536699 tgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatgtatcattactct 35536625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 13898058 - 13898150
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||| | | ||||  ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| ||| ||||||    
T  13898058 aagtgtgcttgtgtgaggtccacatgaacacgtgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 8956831 - 8956761
Alignment:
Q  29 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| |||||    
T  8956831 cacgtgtcacatttttatgtgggtgtcaaaggatgtattgccacataaggatgtctatgtatcattactct 8956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 45058563 - 45058652
Alignment:
Q  8 cttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| ||||| ||  ||| |||||||||||||||||||||| || |||||||||||||||||||| ||| |||||||||||||||    
T  45058563 cttgtgcggggtccatatggtcacatgtcagatttttatgtgggtgtcaa-gggtgtattgccacctaagggtgtttatgtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 36707439 - 36707528
Alignment:
Q  13 gcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttta 102  Q
    |||||||||| || || ||||||||||||||| ||||| ||| ||||||||||||| ||||||||| | |||||||||||| ||||||||    
T  36707439 gcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactcttta 36707528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 48375712 - 48375807
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||| |||||||||||||  ||||||||||| | ||| | || | |||||||||| ||||||||| |||||||| |||||||||||    
T  48375712 tgtgcttgtgcggggtccatgtgaccacacgtcagatttttgtatggattttcaggggtgtattgtcacctaagggtgtctatgaatcataactct 48375807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 35965804 - 35965876
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||||||||||||| ||||| ||||||  ||| ||||||||| |||||||||| ||||||    
T  35965804 ccacgtgtcagatttttatgtgggtgtcaaaggatgtattatcacttaaggatgtatatgtatcattactctt 35965876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9563096 - 9562998
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||| |||||| ||||||| ||||| ||||||||||||||||| ||| ||| ||||| ||||||| || |||| | ||| |||||||||| |||||    
T  9563096 aagtgtgtttgtgcaggatccacgtgactacgtgtcagatttttatatggatgtcaaaggttgtattgtcatctaatggtgtttatgtatcattactct 9562998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 30801739 - 30801828
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||||||| ||| ||||| |||| || ||||| |||||| ||||||| | ||||||||||||  ||||||||| ||||||||||||||    
T  30801739 tgtgcttgtgtggggtccatatgactacatgtcatatttttgtgtgggtatcaaagggtgtattatcacctaagggtgtctatgtatcat 30801828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36331332 - 36331407
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaa 76  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || ||||| ||||||||||||    
T  36331332 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgcattgccacctaa 36331407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 25407150 - 25407243
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcaga-tttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||| ||||| ||||||||| ||| ||||||||||| ||||| |||| |||| || |||| |||||||||||| || ||| ||||||||||    
T  25407150 aagtgtgtttgtgtgggatccatatgatcacgtgtcagattttttgtgtgtgtgtcaaggggtatattgccacctatggttgtgtatgtatcat 25407243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 25395363 - 25395434
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||| |||||||||||| ||||||| |||| || ||||| ||||| ||||||||| ||||||||||| ||||    
T  25395363 ccacatgtcagatttttgtgtgggtattaagggatgtatggccacataaggatgtttatgtatcatagctct 25395434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 42823197 - 42823114
Alignment:
Q  12 tgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataa 95  Q
    |||||| ||||| ||||||| ||||| |||||| ||||||||| || ||||||||| |||| ||| | ||| ||||||||||||    
T  42823197 tgcggggtccatatgaccacatgtcaaatttttttgtgggtgtcaaggggtgtattaccacataatggtgtttatgtatcataa 42823114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 41080801 - 41080709
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| ||| ||||  ||||||| | ||||||||||  |||||||| ||||||||| |||| || |||||||||||||||||||| ||||    
T  41080801 tgtgcttgtgtggg-tccacatgaccacatatcagatttttgcgtgggtgtcaaagggtgttttgctac-taaggatgtctatgtatcattactc 41080709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 36331407 - 36331479
Alignment:
Q  27 accacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||| || ||||||||| ||||| ||| || ||||| ||||||| |||||| ||| ||||||||||||||||    
T  36331407 accacatgccagatttttgtgtggatgtcaaggggtgcattgccatctaagggtgtttatgtatcataactct 36331479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 100
Target Start/End: Complemental strand, 35093658 - 35093583
Alignment:
Q  25 tgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||| ||||||||||||  |||| ||| ||| | ||||||| ||||||| | |||||||||||| ||||||||    
T  35093658 tgaccacatgtcagatttttgcgtggatgtcaaatgttgtattgtcacctaaagttgtctatgtatcgtaactctt 35093583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 1758491 - 1758560
Alignment:
Q  33 tgtcagatttttatgtgggtgttaaaggg--tgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||| ||||||||| || |||  |||||||| ||||| || || ||||||||||||||||||    
T  1758491 tgtcagatttttgtgtgggtgtcaaggggggtgtattgcaacctatggttgactatgtatcataactctt 1758560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 21746247 - 21746284
Alignment:
Q  62 tgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  21746247 tgtattgccacctaaggatgtatatgtatcattactct 21746284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 42100811 - 42100854
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  42100811 ccacgtgtcagaattttatgtgggtg-taaagggtgcattgccac 42100854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 43745827 - 43745755
Alignment:
Q  17 gatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgta 89  Q
    |||||| ||||  |||||||| ||||||| |||| ||| |||| |||||||||||| ||||||| | ||||||    
T  43745827 gatccacgtgatgacgtgtcaaatttttacgtggatgtcaaagagtgtattgccacttaaggatatttatgta 43745755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 46941176 - 46941219
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||    
T  46941176 ccacgtgtcagaattttatgtgggtg-taaagagtgtattgccac 46941219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 53581835 - 53581792
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  53581835 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 53581792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 31976345 - 31976247
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31976345 aagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtatcataactct 31976247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 32869775 - 32869685
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatc 91  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  32869775 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatc 32869685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 22880661 - 22880753
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||||||| |||| ||||| |||||||||| |||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  22880661 aagtgtgcttgtgcggggtccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11427715 - 11427615
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccaccta--aggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||  ||| |||||||||||||| ||||    
T  11427715 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactc 11427616  T
Q  99 t 99  Q
    |    
T  11427615 t 11427615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 17598651 - 17598554
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||| |||||||||||||| ||||    
T  17598651 aagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcattactc 17598554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31110764 - 31110862
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||| || ||||||||   |||||||||||||||  ||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31110764 aagtgtgcttgtgcagggtccatgtggttacgtgtcagattttt--gtgagtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactctt 31110861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 30341363 - 30341463
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| |||||||||||||||||    
T  30341363 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 30341462  T
Q  101 t 101  Q
    |    
T  30341463 t 30341463  T

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Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 15990045 - 15990144
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| |||||||||||||||||    
T  15990045 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 15990144  T

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Target: chr6; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 15508027 - 15508124
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| |||||||||||||||    
T  15508027 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactc 15508124  T

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Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 29857924 - 29857827
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| ||||||||||| || || ||||||||||||||| ||||||||||||| |||||||||||| |||| | |||||||||||||| ||||    
T  29857924 aagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 29857827  T

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Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4231645 - 4231548
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| |||||||||| ||||| || ||||||||||||||||| ||||||||  || |||||||||||||||||| ||||| |||| ||||||||||    
T  4231645 aagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgtgggtggcaaggggtgtattgccacctaatgatgtttatgaatcataactc 4231548  T

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Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 6209468 - 6209569
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||| ||||||| |||| ||||| ||||| ||||||||| |||| |||| |||  |||||||||||||||||| |||||||||||||| ||||||    
T  6209468 aagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactctt 6209567  T
Q  101 ta 102  Q
    ||    
T  6209568 ta 6209569  T

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Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 31953065 - 31953130
Alignment:
Q  33 tgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| ||||    
T  31953065 tgtcagatttttatgtgggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

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Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 28536491 - 28536581
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||| ||| ||||  |||||  ||||||||||||| ||||||||| || || ||||||||||||||||||||| ||||||||||    
T  28536491 aagtgtgcttgtgtggggtccacatgacc--gtgtcagatttttgtgtgggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

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Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31109403 - 31109488
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctat 86  Q
    |||||| ||| |||||| || | ||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||    
T  31109403 aagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctat 31109488  T

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Target: chr6; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 23128130 - 23128222
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||| ||||| ||||||  ||| ||| | ||||||| ||||||    
T  23128130 aagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattatcacataaaggtgtctatatatcat 23128222  T

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Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Complemental strand, 15832666 - 15832574
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    |||||| ||||||| ||||| |||||||| |||||| ||||||||| ||| | | ||||| ||||||| | |||||||||||||| |||||||    
T  15832666 ttgtgcaggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactcttt 15832574  T

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Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 946473 - 946383
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatc 91  Q
    ||||||||| | |||||||  | ||||| | |||||||||||||  || ||||| ||||||||||||  ||||||||||||||||||||||    
T  946473 aagtgtgctagagcgggatttacgtgactaggtgtcagatttttgggtaggtgtcaaagggtgtattatcacctaaggatgtctatgtatc 946383  T

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Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 12732552 - 12732479
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    ||||||||||||||||| ||||||||| || |  | ||||||||| |||| ||||||||||||||| |||||||    
T  12732552 ccacgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactcttt 12732479  T

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Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 30870108 - 30870057
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgtt 55  Q
    |||||||||||||| ||||||||||||| ||| |||||||||| ||||||||    
T  30870108 tgtgcttgtgcggggtccatgtgaccacatgttagatttttatatgggtgtt 30870057  T

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Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 9379742 - 9379808
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcata 94  Q
    |||||||||| |||||| | ||||||| || || ||||||| || ||||||||||||||||||||||    
T  9379742 ccacgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtatcata 9379808  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 3213523 - 3213566
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  3213523 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgccac 3213566  T

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Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 21293654 - 21293611
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  21293654 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgccac 21293611  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 22422084 - 22422119
Alignment:
Q  64 tattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||||||||||||| |||||    
T  22422084 tattgccacctaaggatgtctatgtatcattactct 22422119  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 7367659 - 7367715
Alignment:
Q  15 gggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||| ||  |||||||||||| |||| |||||||| ||||||||||||||||||    
T  7367659 gggatccaggttgccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 7367715  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 26669986 - 26669943
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  26669986 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 26669943  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 40613905 - 40614002
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40613905 aagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 40614002  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 42257290 - 42257190
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||    
T  42257290 aagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtatcataactctt 42257191  T
Q  101 t 101  Q
    |    
T  42257190 t 42257190  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 5574491 - 5574589
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||| |||||    
T  5574491 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactct 5574589  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 38273145 - 38273245
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||| ||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  38273145 aagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatgtatcataactctt 38273244  T
Q  101 t 101  Q
    |    
T  38273245 t 38273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 17473117 - 17473020
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||||| ||||    
T  17473117 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactc 17473020  T

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Target: chr2; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 28863552 - 28863460
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  28863552 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 28863460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 33436103 - 33436203
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  33436103 aagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 33436202  T
Q  101 t 101  Q
    |    
T  33436203 t 33436203  T

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Target: chr2; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 9058577 - 9058478
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| ||||  |||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  9058577 aagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 9058478  T

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Target: chr2; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 30915560 - 30915461
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||| |||| |||| ||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  30915560 aagtgtgcttgtacggggtccacgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 30915461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 10249385 - 10249484
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||| ||||||||| ||||||||| |||||||||||||| ||||||    
T  10249385 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactctt 10249484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 7465738 - 7465836
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||| |||||||||||||||| |||||| |||||||||||||| |||||    
T  7465738 aagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactct 7465836  T

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Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 32505651 - 32505749
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||| ||||||||| ||||||||| |||||||||||||| |||||    
T  32505651 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 32505749  T

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Target: chr2; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36168933 - 36168835
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||| |||||||||||| |||||||| |||||||||| |||||| |||||| |||||||| ||||||| || |||||||||||||||||||||||||||    
T  36168933 aagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatgtatcataactct 36168835  T

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Target: chr2; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 13438440 - 13438343
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||| ||||||| ||||||||| |||||||||||||| ||||    
T  13438440 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtatcattactc 13438343  T

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Target: chr2; HSP #15
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 28381658 - 28381755
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||  |||||||||| ||||||||||||||| |||||||||  || ||||||||||||||||||| |||||||||||||| ||||    
T  28381658 aagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtatcattactc 28381755  T

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Target: chr2; HSP #16
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 20700912 - 20700812
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||| |||||| |||| ||||| ||||||||||||||| ||| || || ||||||||||||||||| |||||||||||||||||||| ||||||    
T  20700912 aagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactctt 20700813  T
Q  101 t 101  Q
    |    
T  20700812 t 20700812  T

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Target: chr2; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2533220 - 2533123
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||||||| || ||||| | ||||||||||||||| ||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||    
T  2533220 aagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtatcataactct 2533123  T

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Target: chr2; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 40701575 - 40701478
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| ||||||||| |||| || || ||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||    
T  40701575 aagtgtgattgtgcggggtccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 19930823 - 19930915
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||| ||||||||| ||||  |||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||    
T  19930823 aagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtatcat 19930915  T

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Target: chr2; HSP #20
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45097738 - 45097838
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| | ||||||| || || ||||||||||||||||||||| |||||||||||||||||    
T  45097738 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtatcataactctt 45097837  T
Q  101 t 101  Q
    |    
T  45097838 t 45097838  T

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Target: chr2; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 33436280 - 33436210
Alignment:
Q  29 cacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||    
T  33436280 cacgtgtcagatttttatgtgggtgtcaaaaggtgtattgccatctaaggatgtctatgtatcattactct 33436210  T

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Target: chr2; HSP #22
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4060782 - 4060685
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| ||||||||||| || || ||||||||||||||| ||||| ||| ||| ||||||||| ||||||||| |||||||||||||| ||||    
T  4060782 aagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactc 4060685  T

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Target: chr2; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 26891510 - 26891607
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    ||||||||| || | |||| |||||||| |||||||||||| |||||||||  | |||||||||||||||||||| || |||||||||||||||||||    
T  26891510 tgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtctaggggtgtattgccacctaagggtggctatgtatcataactcttt 26891607  T

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Target: chr2; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 27864801 - 27864704
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| |||||| |||| ||||  ||||||||||||||| ||||| ||| ||||||||||||||||| ||||| |||||||||||||| ||||    
T  27864801 aagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtatcattactc 27864704  T

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Target: chr2; HSP #25
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 38882835 - 38882923
Alignment:
Q  19 tccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctttagaatta 108  Q
    |||| ||||| ||||||||||||||| ||||| ||| ||||||| ||||||||||||||| |||||||||||||| ||||||||||||||    
T  38882835 tccacgtgactacgtgtcagatttttgtgtggatgtcaaagggt-tattgccacctaagggtgtctatgtatcattactctttagaatta 38882923  T

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Target: chr2; HSP #26
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 43490218 - 43490121
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||| ||||||||| ||| |||||||||||||||    
T  43490218 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgtcacctaagggtgtttatgtatcataactc 43490121  T

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Target: chr2; HSP #27
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 38732451 - 38732354
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| |||||||||| ||||| ||||||| |||||||||||| ||||||||| || || ||||||| ||| ||||| ||| |||||||||||||||    
T  38732451 aagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataagggtgtttatgtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 17820010 - 17820104
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||| ||||| ||| |||| || ||||| |||||||||||| ||||||||| || |||||||||||||||||  | |||||||||||||||||||    
T  17820010 tgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

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Target: chr2; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 2997490 - 2997567
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagg 78  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || ||||||||||||||||||||    
T  2997490 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagg 2997567  T

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Target: chr2; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 15428770 - 15428842
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||| |||||||||||| |||| ||||||| |||||||| ||||| ||||||||| |||||||||||||||||    
T  15428770 ccacatgtcagatttttgtgtgagtgttaaggggtgtatggccacataaggatgtttatgtatcataactctt 15428842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 17823852 - 17823782
Alignment:
Q  30 acgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||| |||||||||| | |  ||||||||||||||||||||| |||||||||| ||||||    
T  17823852 acgtgtcagatttttgtgtgggtgttcaggaatgtattgccacctaaggatgtatatgtatcattactctt 17823782  T

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Target: chr2; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 13365450 - 13365348
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagg--atgtctatgtatcataactc 98  Q
    |||||| |||||||||| ||||| ||  ||| |||||||||||| ||||||||| || |||| |||||||| ||||||   ||| |||||||||||||||    
T  13365450 aagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaagggtgtgtttatgtatcataactc 13365351  T
Q  99 ttt 101  Q
    |||    
T  13365350 ttt 13365348  T

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Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 41575235 - 41575142
Alignment:
Q  1 aagtgtgcttgtgc-gggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||||||||||  ||| ||||  ||||||| ||||| |||||| ||||  ||| |||||||||||| ||| |||||||||||||||||||||    
T  41575235 aagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtcaaagggtgtattaccatctaaggatgtctatgtatcat 41575142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 3440073 - 3439985
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatca 92  Q
    |||||||||||||| |||| || | ||| ||| |||||||| |||||||||  | | |||||||||||||||||| |||||| ||||||    
T  3440073 tgtgcttgtgcggggtccacgtaatcacatgttagatttttgtgtgggtgtccaggagtgtattgccacctaagggtgtctacgtatca 3439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 44151995 - 44151924
Alignment:
Q  27 accacgtgtcagatttttat-gtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 97  Q
    |||||||||||||||||| | || |||||||||| |||||||| ||||||  | ||||||||||||||||||    
T  44151995 accacgtgtcagattttttttgtaggtgttaaagagtgtattgtcacctatagttgtctatgtatcataact 44151924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 3154237 - 3154197
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagattttt 44  Q
    |||| ||| ||||||||||||||||||||||||||||||||    
T  3154237 tgtgtttgggcgggatccatgtgaccacgtgtcagattttt 3154197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 3738037 - 3737987
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgt 54  Q
    |||||||||||||| ||||  ||||||| |||||||||||| |||||||||    
T  3738037 tgtgcttgtgcggggtccacatgaccacatgtcagatttttgtgtgggtgt 3737987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 16096871 - 16096914
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  16096871 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 16096914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 42849836 - 42849793
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  42849836 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 42849793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 46374808 - 46374902
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46374808 tgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgttaaagggtgtgttgccacctaaggatgtctatgtatcataactc 46374902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 35522973 - 35522877
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataact 97  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  35522973 aagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatgtatcataact 35522877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 3434659 - 3434561
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  3434659 aagtgtgcttgtgcgggatccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 3434561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 6 - 99
Target Start/End: Original strand, 46033809 - 46033902
Alignment:
Q  6 tgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  46033809 tgcttgtgcggagttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatgtatcataactct 46033902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8080386 - 8080485
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||    
T  8080386 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactctt 8080485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 7389486 - 7389387
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||| ||||||    
T  7389486 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactctt 7389387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 19436190 - 19436289
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||    
T  19436190 aagtgtgcttatgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactctt 19436289  T

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Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 19329939 - 19329842
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||  ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||    
T  19329939 aagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtatcattactc 19329842  T

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Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3784092 - 3784000
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||| ||||||||||||||    
T  3784092 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtatcat 3784000  T

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Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 26296735 - 26296643
Alignment:
Q  7 gcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||| ||||| || |||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  26296735 gcttgtgcggggtccatatggccacgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtatcataactct 26296643  T

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Target: chr7; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 38837314 - 38837214
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||| |||||  |||||||||||||||||||||| |||||||||||||| ||||||    
T  38837314 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactctt 38837215  T
Q  101 t 101  Q
    |    
T  38837214 t 38837214  T

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Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 36361916 - 36362014
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||| |||||    
T  36361916 aagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 36362014  T

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Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 38267137 - 38267040
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||| ||| ||||| |||||||||||||| ||||    
T  38267137 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactc 38267040  T

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Target: chr7; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 40957804 - 40957703
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||| ||||||| | |||| |||||||||||||||||  |||||||||||||| ||||||    
T  40957804 aagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactctt 40957705  T
Q  101 ta 102  Q
    ||    
T  40957704 ta 40957703  T

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Target: chr7; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 21234495 - 21234395
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctttag 103  Q
    |||||||||||||| | |||||| | |||||||| |||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  21234495 tgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatgtatcataactcattag 21234396  T
Q  104 a 104  Q
    |    
T  21234395 a 21234395  T

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Target: chr7; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 31735974 - 31735884
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||||||| ||||||||       || |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31735974 aagtgtgcttgtgcgggatccatgtggccacgtgt-------ttgtgtgggtgttaaagagtgtattgccacctaaggatgtctatgtatcataactc 31735884  T

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Target: chr7; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 36362123 - 36362025
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    ||||||||||||| ||| |||| ||||| ||||||||||||||| ||||||||| ||||| |||||| |||||||||| |||||||||||||| |||||    
T  36362123 aagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactct 36362025  T

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Target: chr7; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 35137630 - 35137533
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| ||||||||| |||| ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||    
T  35137630 aagtgtgtttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

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Target: chr7; HSP #19
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3694464 - 3694372
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||| ||| ||||||    
T  3694464 aagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgtcacctaagggtgtgtatatatcat 3694372  T

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Target: chr7; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 8238310 - 8238212
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccaccta-aggatgtctatgtatcataactc 98  Q
    |||||| |||||||||| ||||| |||| || |||||||||||| ||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||    
T  8238310 aagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctacagggtgtttatgtatcataactc 8238212  T

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Target: chr7; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 22343458 - 22343360
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||| |||||||||| ||||| ||  ||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| ||||||||||||||||    
T  22343458 aagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 22343360  T

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Target: chr7; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 41915838 - 41915740
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||| ||||| || |||||||||||||||||||| ||| ||||||||||||||||    
T  41915838 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtaggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactct 41915740  T

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Target: chr7; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 4999517 - 4999614
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| ||||||||| |||| ||||| |||| |||||||||| ||||||||| ||| |||||||||||| |||||| |||||||||||||| ||||    
T  4999517 aagtgtgtttgtgcggggtccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatgtatcattactc 4999614  T

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Target: chr7; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7728003 - 7727903
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| ||||||| |||||||||||||||||  ||| ||  |||||||| |||||||||| ||| |||||||||||||||||    
T  7728003 aagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgtcaagaggtgtattaccacctaagggtgtttatgtatcataactctt 7727904  T
Q  101 t 101  Q
    |    
T  7727903 t 7727903  T

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Target: chr7; HSP #25
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 38044294 - 38044195
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || | || |||||||||||| ||||| ||| || |||||||||||||||||||| ||| |||||||||||||||||    
T  38044294 aagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtggatgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 38044195  T

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Target: chr7; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 32564437 - 32564526
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||| ||||| |  |||| |||||||||||| ||||||||| || ||||||||||||||||||| |||| |||||||||||||||    
T  32564437 ttgtgcggggtccatatagccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagaatgtttatgtatcataactc 32564526  T

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Target: chr7; HSP #27
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 18207276 - 18207177
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||| ||| | || ||| |||||||| |||||||| | ||||||| ||  ||||||||||||||||||| |||||||||||||||||||||    
T  18207276 aagtgtgcttgtgtggggttcacgtg-ccacgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactctt 18207178  T

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Target: chr7; HSP #28
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32951496 - 32951588
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||||||||||||| |||| ||||| |||||| |||||||| ||||| ||||||||| ||||||| || |||||  ||||||||||||||    
T  32951496 aagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatgtatcat 32951588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 36208267 - 36208171
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||| || |||| |||||||| |||||| ||||| ||||||||| || |  |||||| |||||||||| |||||||||||||||||||||    
T  36208267 tgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactctt 36208171  T

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Target: chr7; HSP #30
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 40846124 - 40846213
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||| ||||| | || || ||| |||||||| ||||| ||| || |||||||||||||||||||||||| |||||||||||||||    
T  40846124 ttgtgcggggtccatataactacatgttagatttttgtgtggatgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 35468894 - 35468958
Alignment:
Q  37 agatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    |||||||||||||||||| ||| | |||||||||| ||||||||||||||||||||| |||||||    
T  35468894 agatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatgtatcattactcttt 35468958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 39255953 - 39256023
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| | ||||| | ||  ||||||||||||||||||| |||||||||||||||||||    
T  39255953 ccacgtgtcagatttttgtatgggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 98
Target Start/End: Complemental strand, 41423774 - 41423682
Alignment:
Q  6 tgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||| ||||||| | |||||||| |||||||||||| |||  |||| ||  |||||||| ||| |||| |||||||||||||||||||||    
T  41423774 tgcttgtacgggatctacgtgaccacatgtcagatttttgtgtaagtgtcaagaggtgtattaccatctaatgatgtctatgtatcataactc 41423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 10343597 - 10343666
Alignment:
Q  32 gtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    ||||||||||||| ||||||||| ||   ||||||| |||||||||| |||||||||||||| |||||||    
T  10343597 gtgtcagatttttgtgtgggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactcttt 10343666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 11044237 - 11044185
Alignment:
Q  49 gggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||| |||||||    
T  11044237 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactcttt 11044185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 45223110 - 45223039
Alignment:
Q  30 acgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    ||||||||||||||| ||| | |||| |||  ||||||||||||||||||||| ||| |||||| |||||||    
T  45223110 acgtgtcagatttttgtgtagatgttcaagaatgtattgccacctaaggatgtatatatatcattactcttt 45223039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 16374829 - 16374894
Alignment:
Q  3 gtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattg 68  Q
    ||||||||||| | |||||| ||||||||||||||||||||| ||||| ||| || || |||||||    
T  16374829 gtgtgcttgtgtgagatccacgtgaccacgtgtcagatttttgtgtggatgtcaagggatgtattg 16374894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 44326301 - 44326344
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  44326301 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgccac 44326344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 26898398 - 26898336
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    ||||| ||| |||| || ||||||||||||| ||||||||||||| |||| |||||||||||||    
T  26898398 ttgtgtggggtccaggttaccacgtgtcagaattttatgtgggtg-taaaaggtgtattgccac 26898336  T

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Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 27744315 - 27744375
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgt 64  Q
    ||||||| || |||||||| ||| |||| |||||||||||| ||||||| | |||||||||    
T  27744315 tgtgcttatgagggatccacgtggccacatgtcagatttttgtgtgggtatcaaagggtgt 27744375  T

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Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 32029794 - 32029751
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  32029794 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 32029751  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 43414584 - 43414681
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||||||||||    
T  43414584 aagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatgtatcataactc 43414681  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 37038576 - 37038478
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| |||||    
T  37038576 aagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactct 37038478  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4854866 - 4854965
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||||| || |||||||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4854866 aagtgtgcttgtgcagggtccatgtggccacatatcagatttttatgtaggtgttaaagggtgtattgccacctaaggatgtctatgtatcattactctt 4854965  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 10621090 - 10621185
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataac 96  Q
    |||||||||||||||||||| ||||| | ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  10621090 aagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataac 10621185  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 15048185 - 15048281
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||||||| | ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  15048185 aagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtatcataactc 15048281  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5957927 - 5957835
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcat 93  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  5957927 aagtgtgattgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtatcat 5957835  T

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Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 12831144 - 12831038
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||| |||| |    
T  12831144 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactcct 12831045  T
Q  101 tagaatt 107  Q
    | |||||    
T  12831044 tcgaatt 12831038  T

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Target: chr8; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 15197430 - 15197333
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||| ||||    
T  15197430 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactc 15197333  T

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Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 34012299 - 34012396
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||||||||| ||||| |||||||| |||||| ||||||||| |||||||||||| |||||||||| |||||||||||||| ||||    
T  34012299 aagtgtgcttgtgcgggatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

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Target: chr8; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 504126 - 504221
Alignment:
Q  3 gtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| ||||    
T  504126 gtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

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Target: chr8; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10284634 - 10284737
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| |||||||| |||||| ||||||||| |||| |||||||| ||| ||||| |||||||||||||||||||||    
T  10284634 aagtgtgcttgtgcggggtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtatcataactctt 10284733  T
Q  101 taga 104  Q
    ||||    
T  10284734 taga 10284737  T

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Target: chr8; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 14548019 - 14547920
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||| | ||||||    
T  14548019 aagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtatctttactctt 14547920  T

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Target: chr8; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 1179943 - 1180040
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||||| |||||  |||| ||||||||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||| ||||    
T  1179943 aagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

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Target: chr8; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 16383474 - 16383374
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| |||||||||||||||||    
T  16383474 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 16383375  T
Q  101 t 101  Q
    |    
T  16383374 t 16383374  T

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Target: chr8; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 44507090 - 44507188
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||| ||||||| |||| |||| ||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||||| |||||    
T  44507090 aagtatgcttgtacggggtccacgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactct 44507188  T

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Target: chr8; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 23122600 - 23122697
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| |||||| |||| ||||| ||||||||||||||| ||||||||| ||| ||||||||||||| ||||| |||||||||||||| ||||    
T  23122600 aagtgtgcttatgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtatcattactc 23122697  T

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Target: chr8; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 40423946 - 40424043
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||| ||||  |||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||| | |||||||||||| ||||    
T  40423946 aagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactc 40424043  T

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Target: chr8; HSP #18
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 34307313 - 34307214
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| | ||| || |||| |||||||||||| ||||||||| || |||||||||||||||||||| ||| |||||||||||||||||    
T  34307313 aagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacctaagggtgtttatgtatcataactctt 34307214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 20074964 - 20075034
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||    
T  20074964 ccacgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtatcattactc 20075034  T

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Target: chr8; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 30479477 - 30479574
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| |||||||| | ||||| |  |||| |||||||||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  30479477 aagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtggatgtcaaagggtgtattgccacctaagggtgtttatgtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 16056404 - 16056504
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| |||||||||||| ||||||||| || || ||||||| ||| ||||||||| |||||||||||||||||    
T  16056404 aagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgtcacataaggatgtttatgtatcataactctt 16056503  T
Q  101 t 101  Q
    |    
T  16056504 t 16056504  T

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Target: chr8; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24307796 - 24307895
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||| |||||||||| ||||| || |||| | |||||||||| ||||||||| || || ||||||||||||||||| ||| |||||||||||||||||    
T  24307796 aagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtgggtgtcaagggatgtattgccacctaagggtgtttatgtatcataactctt 24307895  T

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Target: chr8; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8841435 - 8841512
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagg 78  Q
    ||||||||||||||||| |||| ||||| |||||| |||||||| ||||||||| |||||||||| ||||||||||||    
T  8841435 aagtgtgcttgtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtactgccacctaagg 8841512  T

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Target: chr8; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 32032821 - 32032724
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||| ||||||| |||||||| || |||| |||||||||||| ||||| ||| || || ||||||||||||||||| ||| ||||||||||||||||    
T  32032821 aagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgtggatgtcaa-ggatgtattgccacctaagggtgtttatgtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 15258935 - 15259031
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||| || |||| |||||||| |||||||||||||||||| |||  | || |||||||||| |||||  | |||||||||||||||||||    
T  15258935 tgtgcttgtgcagggtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatgtatcataactctt 15259031  T

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Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 24307692 - 24307626
Alignment:
Q  35 tcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactcttt 101  Q
    |||||||||| ||||||||| || || ||||||||||||||||| ||| ||||||||||||||||||    
T  24307692 tcagatttttgtgtgggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactcttt 24307626  T

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Target: chr8; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 42221612 - 42221513
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    ||||||||||||  ||| ||||| |||  ||||||||||||||| |||||||||  | |  ||||||| ||||||||||||| |||||||||| ||||||    
T  42221612 aagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgtccaggaatgtattgtcacctaaggatgtatatgtatcattactctt 42221513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 17443890 - 17443824
Alignment:
Q  33 tgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||| |||| |||||||   |||||||| ||||||||| ||||||||||||||||||||    
T  17443890 tgtcagatttttgtgtgagtgttaagaagtgtattgtcacctaaggttgtctatgtatcataactct 17443824  T

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Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9122282 - 9122229
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgt 54  Q
    |||||||||||||||||||||| ||||| || |||||||||||| |||||||||    
T  9122282 aagtgtgcttgtgcgggatccacgtgactacatgtcagatttttgtgtgggtgt 9122229  T

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Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 20148883 - 20148926
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||    
T  20148883 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgccac 20148926  T

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Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 2547100 - 2547162
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    ||||| |||||||| ||  |||||||||||| |||| |||||||| ||||||||||||||||||    
T  2547100 ttgtgtgggatccaagttgccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 2547162  T

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Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 14055613 - 14055692
Alignment:
Q  19 tccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||| ||||| || ||| |||||||| ||||| ||| || | |||||||| ||||||||| |||| ||||||||||||||    
T  14055613 tccacgtgactacatgtaagatttttgtgtggatgtcaaggagtgtattgtcacctaagggtgtcaatgtatcataactc 14055692  T

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Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 29705466 - 29705528
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    ||||||||| |||| ||  |||||||||||| |||| |||||||| ||||||||||||||||||    
T  29705466 ttgtgcggggtccaagttgccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 29705528  T

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Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 9122234 - 9122200
Alignment:
Q  59 gggtgtattgccacctaaggatgtctatgtatcat 93  Q
    |||||||||||||||||||| ||||||||||||||    
T  9122234 gggtgtattgccacctaagggtgtctatgtatcat 9122200  T

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Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 25838234 - 25838196
Alignment:
Q  61 gtgtattgccacctaaggatgtctatgtatcataactct 99  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  25838234 gtgtattgccacctaaggatatctatttatcataactct 25838196  T

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Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 38229522 - 38229429
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||| | | ||||| |||||||| |||||||||||| ||||||||| |  | | |||||||||||||||  |||  ||||||||||||||    
T  38229522 tgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggtgtcag-gagcgtattgccacctaagagtgttcatgtatcataactc 38229429  T

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Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 3743894 - 3743934
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgc 69  Q
    |||||||||||| ||||||||||||| |||||||||||||||    
T  3743894 ccacgtgtcagaattttatgtgggtg-taaagggtgtattgc 3743934  T

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Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 26125757 - 26125800
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  26125757 ccacgtgtcagaattttatgcgggtg-taaagggtgtattgccac 26125800  T

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Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 29800927 - 29800884
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||    
T  29800927 ccacatgtcagaattttatgtgggtg-taaagggtgtattgccac 29800884  T

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Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 30660719 - 30660676
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||||||||| || ||||||||||||||||||    
T  30660719 ccacgtgtcagaattttatgtggatg-taaagggtgtattgccac 30660676  T

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Target: scaffold1268 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 932 - 1029
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||||| || ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  932 aagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

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Target: scaffold1267 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 932 - 1029
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    ||||||||||||||||||| || ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  932 aagtgtgcttgtgcgggattcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtatcattactc 1029  T

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Target: scaffold0321 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 10112 - 10212
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactctt 100  Q
    |||||||||||| || | |||| ||||| ||||||||||||||||||||| ||| ||||| ||||||||||||||| | |||||||||||||||||||||    
T  10112 aagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtatcataactctt 10211  T
Q  101 t 101  Q
    |    
T  10212 t 10212  T

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Target: scaffold0237 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 4126 - 4029
Alignment:
Q  1 aagtgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||| ||||||||||| || || ||||||||||||||| ||||||||||||| |||||||||||| |||| | |||||||||||||| ||||    
T  4126 aagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccatctaaaggtgtctatgtatcattactc 4029  T

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Target: scaffold0018 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 152587 - 152518
Alignment:
Q  9 ttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagg 78  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||| || ||||||||||||||| ||||    
T  152587 ttgtgcgggatccatatgaccacatgtcagatttttgtgtgggtgtcaaggggtgtattgccacccaagg 152518  T

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Target: scaffold0316 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 17148 - 17058
Alignment:
Q  4 tgtgcttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||| |||  | || |||||||| ||||    ||||||||| ||||||||||    
T  17148 tgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtcgagggatgtattgcaacct----atgtctatgaatcataactc 17058  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 8873 - 8963
Alignment:
Q  8 cttgtgcgggatccatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaaggatgtctatgtatcataactc 98  Q
    |||||| ||| |||| ||||| | |||||| |||||| ||| | ||| |||  |||||||| ||| ||||||||||||| |||||||||||    
T  8873 cttgtgtggggtccacgtgactatgtgtcaaatttttgtgtagatgtcaaatagtgtattgtcacttaaggatgtctatatatcataactc 8963  T

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Target: scaffold0119 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 808 - 851
Alignment:
Q  28 ccacgtgtcagatttttatgtgggtgttaaagggtgtattgccac 72  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||    
T  808 ccacgtgtcagaattttgtgtgggtg-taaagggtgtattgccac 851  T

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