View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_high_33 (Length: 320)

Name: NF8986_high_33
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_high_33
NF8986_high_33
[»] chr2 (4 HSPs)
chr2 (16-196)||(17722629-17722809)
chr2 (223-309)||(17725102-17725188)
chr2 (16-82)||(17727244-17727310)
chr2 (196-225)||(17724116-17724145)
[»] chr4 (7 HSPs)
chr4 (16-186)||(13037247-13037417)
chr4 (223-309)||(13039707-13039793)
chr4 (16-81)||(36265489-36265554)
chr4 (21-81)||(13041976-13042036)
chr4 (16-73)||(31837813-31837870)
chr4 (16-58)||(13041917-13041959)
chr4 (196-225)||(13038734-13038763)
[»] chr5 (1 HSPs)
chr5 (16-81)||(30591473-30591538)
[»] chr3 (1 HSPs)
chr3 (16-81)||(7707270-7707334)
[»] chr8 (1 HSPs)
chr8 (241-309)||(11025843-11025911)


Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 17722629 - 17722809
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgttctcaacttggcatcagagctcacgattagtgggcctgagag 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  17722629 ataaatacaaaaggctgagagctaatctctcaagttattcagcaccagaaaaccttgttctcaacttggcatcagagctcacgatcagtgggcctgagag 17722728  T
Q  116 caaaagtctaaaatctcaaaatcctagccgtcaagttacaaacctagttgtcccgtcggttgatctatacctccggcccta 196  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  17722729 caaaagtctaaaatctcaaaaccctagccgtcaagttacaaacatagttgtcccgtcggttgatctataccgccggcccta 17722809  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 17725102 - 17725188
Alignment:
Q  223 tgtgtctttctagaccagtcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc 309  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17725102 tgtgtctttctaggctattcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc 17725188  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 17727244 - 17727310
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgttctcaactt 82  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  17727244 ataaatacaaaagactgagagctaatctctcaagttattcagcaccagaaaaccttgttctcaactt 17727310  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 17724116 - 17724145
Alignment:
Q  196 atctttaaatattgacaatgttctttttgt 225  Q
    ||||||||||||||||||||||||||||||    
T  17724116 atctttaaatattgacaatgttctttttgt 17724145  T

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Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 13037247 - 13037417
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgttctcaacttggcatcagagctcacgattagtgggcctgagag 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  13037247 ataaatacaaaaggctgagagctaatctctcaagttattcagcaccagaaaaccttgttctcaacttggcatcagagctcacgatcagtgggcctgagag 13037346  T
Q  116 caaaagtctaaaatctcaaaatcctagccgtcaagttacaaacctagttgtcccgtcggttgatctatacc 186  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13037347 caaaagtctaaaatctcaaaaccctagccgtcaagttacaaacctagttgtcccgtcggttgatctatacc 13037417  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 223 - 309
Target Start/End: Original strand, 13039707 - 13039793
Alignment:
Q  223 tgtgtctttctagaccagtcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc 309  Q
    ||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13039707 tgtgtctttctaggctattcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc 13039793  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 36265489 - 36265554
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgttctcaact 81  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  36265489 ataaatacaaaaggctgagagctaatctctcaagttattcagcaccagaaaaccttgttctcaact 36265554  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 13041976 - 13042036
Alignment:
Q  21 tacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgttctcaact 81  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  13041976 tacaaaaggctgagagctaatctctcaagttattcagcaccagaaaaccttgttctcaact 13042036  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 31837870 - 31837813
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgt 73  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  31837870 ataaatacaaaaggctgagagctaatctctcaagttattcagcaccagaaaaccttgt 31837813  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 13041917 - 13041959
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagc 58  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  13041917 ataaatacaaaaggctgagagctaatctctcaagttattcagc 13041959  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 13038734 - 13038763
Alignment:
Q  196 atctttaaatattgacaatgttctttttgt 225  Q
    ||||||||||||||||||||||||||||||    
T  13038734 atctttaaatattgacaatgttctttttgt 13038763  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 30591538 - 30591473
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgttctcaact 81  Q
    |||||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||    
T  30591538 ataaatacaaaaggttgagagctaatctcttaagttattcagcaccagaaaaccttgttctcaact 30591473  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 7707334 - 7707270
Alignment:
Q  16 ataaatacaaaaggctgagacctaatctctcaagttattcagcaccagaaaatcttgttctcaact 81  Q
    ||||||||||||| |||||  |||||||||||||||||||||||||| |||| |||||||||||||    
T  7707334 ataaatacaaaagtctgagggctaatctctcaagttattcagcacca-aaaaccttgttctcaact 7707270  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 309
Target Start/End: Complemental strand, 11025911 - 11025843
Alignment:
Q  241 tcaagagttcaaaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc 309  Q
    ||||||||| | |||||||||  |||||||||||| || || ||| |||||||||||| || |||||||    
T  11025911 tcaagagtttagaaaggatataagtgctattgtccatcaacgcatagcttctacatgtttgttgatgtc 11025843  T

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