View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_high_49 (Length: 230)
Name: NF8986_high_49
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 3516989 - 3517177
Alignment:
| Q |
19 |
agacacaacacatatcaaacaaatgcttaatctagaatgcatccaaatgnnnnnnnagttgtttaaaacatgttgtagtatgcaattgagtcacctagta |
118 |
Q |
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| T |
3516989 |
agacacaacacatatcaaacaaatgcttaatctagaatgcatccaaatgtttttttagttgtttaaaacatgttgtagtatgcaattgagtcatctagta |
3517088 |
T |
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| Q |
119 |
agaaagaatcattttctattctctcagatttatattgaattttttaaatcaatatatctgatccccacgaacaccttaattatcagttt |
207 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
3517089 |
agaaagaatcattttctactctctcggatttatattgaattttttaaatcagtatacttgatccccacgaacaccttaattatcagttt |
3517177 |
T |
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