View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_10 (Length: 754)
Name: NF8986_low_10
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 698; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 698; E-Value: 0
Query Start/End: Original strand, 20 - 737
Target Start/End: Complemental strand, 44460461 - 44459744
Alignment:
| Q |
20 |
tttggatcgaatggtttcggagtattttgaaaggagtgtgaaggctttggatgtctgtaacgccattcgtgatggcgttgaacagattcgtgtttggcag |
119 |
Q |
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| T |
44460461 |
tttggatcgaatggtttcggagtattttgaaaggagtgtgaaggctttggatgtctgtaacgccattcgtgacggcgttgaacagattcgtgtttggcag |
44460362 |
T |
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| Q |
120 |
aaactgttggagattgttctttatgcattggatcatcagaggagtattggtgaaggacaatttcgtagagcgaagaaagctctaattgatttgtcaatca |
219 |
Q |
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| T |
44460361 |
aaactgttggagattgttctttatgcattggatcatcagaggagtattggtgaaggacaatttcgtagagcgaagaaagctctaattgatttgtcaatca |
44460262 |
T |
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| Q |
220 |
gtatgcttgatgatggtaaggaatccaatgcttctgttgcacacaggaatcgatcttttggccgcagcaatggtggtagagatagagatcaccatcaaca |
319 |
Q |
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| T |
44460261 |
gtatgcttgatgatggtaaggaatccaatgcttctgttgcacacaggaatcgatcttttggccgcagcaatggtggtagagatagagatcaccatcaaca |
44460162 |
T |
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| Q |
320 |
tggcaacagtcatagcaataacaatattaacacctatcagcatcggtctatggggcaatttagatcactttcgtggagtgtttctcgtacttggtctgct |
419 |
Q |
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| T |
44460161 |
tggcaacagtcatagcaataacaatattaacacctatcagcatcggtctatggggcaatttagatcactttcgtggagtgtttctcgtacttggtctgct |
44460062 |
T |
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| Q |
420 |
gctagacagctccaagcaattgggaacaacattaatcctccaagagcaaatgatcttatggcaactaatggtcttgcaatgtccgtgtataccatgaatt |
519 |
Q |
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| T |
44460061 |
gctagacagctccaagcaattgggaacaacattaatcctccaagagcaaatgatcttatggcaactaatggtcttgcaatgtcggtgtataccatgaatt |
44459962 |
T |
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| Q |
520 |
cggtattgttgtttgttatgtgggctcttgtggctgcaattccatgccaagaccgtggattgaacgtgcatttcagcatcccaaggagttacacttgggc |
619 |
Q |
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| T |
44459961 |
cggtattgttgtttgttatgtgggctcttgtggctgcaattccatgccaagaccgtggattgaatgtgcatttcagcattccaaggagttacacttgggc |
44459862 |
T |
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| Q |
620 |
tattcctttgctctcacttcatgagaggatcatggaggagtccaagaagcgtgacaggaagaatgcttgtggcttgcttagagagattcaacagattgag |
719 |
Q |
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| T |
44459861 |
tattcctttgctcttacttcatgagaggatcatggaggagtccaagaagcgtgacaggaagaatgcttgtggcttgcttagagagattcaacagattgag |
44459762 |
T |
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| Q |
720 |
aaatgtgtcagggtgatg |
737 |
Q |
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| T |
44459761 |
aaatgtgtcagggtgatg |
44459744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 12976404 - 12976486
Alignment:
| Q |
129 |
gagattgttctttatgcattggatcatcagaggagtattggtgaaggacaatttcgtagagcgaagaaagctctaattgattt |
211 |
Q |
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| T |
12976404 |
gagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgattt |
12976486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 12997564 - 12997646
Alignment:
| Q |
129 |
gagattgttctttatgcattggatcatcagaggagtattggtgaaggacaatttcgtagagcgaagaaagctctaattgattt |
211 |
Q |
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| T |
12997564 |
gagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgattt |
12997646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 13008803 - 13008885
Alignment:
| Q |
129 |
gagattgttctttatgcattggatcatcagaggagtattggtgaaggacaatttcgtagagcgaagaaagctctaattgattt |
211 |
Q |
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| T |
13008803 |
gagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgattt |
13008885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 211
Target Start/End: Original strand, 13012362 - 13012444
Alignment:
| Q |
129 |
gagattgttctttatgcattggatcatcagaggagtattggtgaaggacaatttcgtagagcgaagaaagctctaattgattt |
211 |
Q |
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| T |
13012362 |
gagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgattt |
13012444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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