View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_103 (Length: 293)
Name: NF8986_low_103
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_103 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 36922388 - 36922608
Alignment:
| Q |
12 |
gacatcagtatggggagccttgtcacctaatgtgcaacaagtgtctttcaatgtggattctgagtttaataaacttttcatatctaaggccacagaaacc |
111 |
Q |
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| T |
36922388 |
gacatcagtatggggagccttgtcacctaatgtgcaacaagtgtctttcaatgtggattctgagtttaataaacttttcatatctaaggccacagaaacc |
36922487 |
T |
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| Q |
112 |
acaagtctcattctccctaccatttagtttgacttgtttatagtatatcccaataatattcttatgtgtggaatatttcttttattgaatatgtgtggaa |
211 |
Q |
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| T |
36922488 |
acaagtctcattctccctaccatttagtttgacttgtttatagtataccccaataatattcttatgtgtggaatatttcttttattgaatatgtgtggaa |
36922587 |
T |
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| Q |
212 |
tttacgtaataaggtgtttga |
232 |
Q |
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|||| |||||||||||||||| |
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| T |
36922588 |
tttatgtaataaggtgtttga |
36922608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 36929989 - 36930159
Alignment:
| Q |
13 |
acatcagtatggggagccttgtcacctaatgtgcaacaagtgtctttcaatgtggattctgagtttaataaacttttcatatctaaggccacagaaacca |
112 |
Q |
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|||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| |||||| | || ||||||||||||||| |||| |||||| |
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| T |
36929989 |
acatcagtttggggagccttatcacctacggtgcaacaggtgtctttcaatgtggattccgagtttcaaaaccttttcatatctaagagcacaaaaacca |
36930088 |
T |
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| Q |
113 |
caagtctcattctccctaccatttagttt-gacttgtttatagtatatcccaataatattcttatgtgtggaat |
185 |
Q |
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||| ||||||||||||||||||||||||| |||||||||| ||||| | ||||| |||||||||||||||| |
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| T |
36930089 |
caaatctcattctccctaccatttagtttggacttgttta---tatattcaaataaatttcttatgtgtggaat |
36930159 |
T |
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