View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_106 (Length: 274)
Name: NF8986_low_106
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 38 - 257
Target Start/End: Complemental strand, 11354573 - 11354362
Alignment:
| Q |
38 |
tataatttgggacggaggtagtaatatatattgagtagatggtaatggatggggagtttcagttaaaatttaaggaacattttgtaattttaatgactaa |
137 |
Q |
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| T |
11354573 |
tataatttgggacggagttagtaatatatattgagtagatggtagtggatggg-agtttcagttaaaatttaaggaacattttgtaattttagtgactaa |
11354475 |
T |
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| Q |
138 |
ctcatcaatgcaattcaactttatccaattcatttccataaaataatctcaagtgattttaagaatcataataagttctaaattctaaacctaagtcatc |
237 |
Q |
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| T |
11354474 |
ctcatcaatgcaattcaactttatccaattcatttccataaaataatctcaagtgattttaagaatcataataagttc-------taaacctaagtcatc |
11354382 |
T |
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| Q |
238 |
tttcatatcataattcctga |
257 |
Q |
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| T |
11354381 |
tttcatatcataattcctga |
11354362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 40018370 - 40018337
Alignment:
| Q |
188 |
aagtgattttaagaatcataataagttctaaatt |
221 |
Q |
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| T |
40018370 |
aagtgattttaagaatcataataagttctaaatt |
40018337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 186999 - 187031
Alignment:
| Q |
189 |
agtgattttaagaatcataataagttctaaatt |
221 |
Q |
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| T |
186999 |
agtgattttaagaatcataataagttctaaatt |
187031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 221
Target Start/End: Original strand, 24314249 - 24314283
Alignment:
| Q |
187 |
caagtgattttaagaatcataataagttctaaatt |
221 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
24314249 |
caagtgattttaagaatcattataagttctaaatt |
24314283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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