View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_112 (Length: 251)

Name: NF8986_low_112
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_112
NF8986_low_112
[»] chr5 (12 HSPs)
chr5 (16-235)||(39464268-39464487)
chr5 (63-217)||(39486755-39486909)
chr5 (69-217)||(39458024-39458173)
chr5 (69-217)||(39470488-39470636)
chr5 (60-217)||(39451287-39451444)
chr5 (63-235)||(39460537-39460709)
chr5 (63-220)||(39483547-39483704)
chr5 (68-214)||(39472325-39472471)
chr5 (63-220)||(39475796-39475953)
chr5 (65-194)||(39454925-39455054)
chr5 (63-183)||(43312299-43312419)
chr5 (20-53)||(39454859-39454892)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 39464487 - 39464268
Alignment:
Q  16 tcacaaaccaaacgtcaaacaagccgtctctaacctcaatgtcaccaccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattt 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464487 tcacaaaccaaacgtcaaacaagccgtctctaacctcgatgtcaccaccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattt 39464388  T
Q  116 tccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39464387 tccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactc 39464288  T
Q  216 agctggagcaactgactgaa 235  Q
    ||||||||||||||||||||    
T  39464287 agctggagcaactgactgaa 39464268  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 39486755 - 39486909
Alignment:
Q  63 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg 162  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||| |  | |||||||||||  |||||||||| |||||    
T  39486755 ccttcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttgg 39486854  T
Q  163 tttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcag 217  Q
    |||||  || ||| |||||||| ||||||||||||||||| ||||||||||||||    
T  39486855 tttgatgctccatcttcacactctgtttgaacgagacaacatcgattcaactcag 39486909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 39458173 - 39458024
Alignment:
Q  69 ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttg-a 167  Q
    ||||||||||||||||||||| ||||||||||||||  || |||||||| |||||| || | || |||||||||||  |||||||||||||||||||| |    
T  39458173 ttgttgacatgttctgcaccaccatgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaa 39458074  T
Q  168 atcttcatattcacactttgtttgaacgagacaacgtcgattcaactcag 217  Q
    ||||||||||||| | | ||||||||||||||||||| ||||| ||||||    
T  39458073 atcttcatattcataatatgtttgaacgagacaacgttgattccactcag 39458024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 39470636 - 39470488
Alignment:
Q  69 ttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttgaa 168  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||  |  |||||||||||||||||||    
T  39470636 ttgttgacatgttctgcacaaacatgattgatgttgccaaagaattttccctccctgcgtttgtgttgttcacttccggcattgctttccttggtttgaa 39470537  T
Q  169 tcttcatattcacactttgtttgaacgagacaacgtcgattcaactcag 217  Q
    |||  |||||||   | ||||||||||||||| |  |||||| ||||||    
T  39470536 tctctatattcaatatctgtttgaacgagacagcaccgattcgactcag 39470488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 60 - 217
Target Start/End: Original strand, 39451287 - 39451444
Alignment:
Q  60 ccaccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttcct 159  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||| |||||||| || |||  | | || |||||||||||  | ||||||| |||    
T  39451287 ccaccatcgttgttgacatgttctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttctggcgttgcttccct 39451386  T
Q  160 tggtttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcag 217  Q
    ||||||||||||||||||||| ||  |   ||||||||||||||| ||||||||||||    
T  39451387 tggtttgaatcttcatattcataccctccgtgaacgagacaacgttgattcaactcag 39451444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 39460537 - 39460709
Alignment:
Q  63 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg 162  Q
    |||| |||||||||||||||||||| || ||||||||| ||||||| |||||||| |||||| || |||| |||||||||||  ||||||||| ||||||    
T  39460537 cctttgttgttgacatgttctgcactaaaatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttgg 39460636  T
Q  163 tttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctggagcaactgactgaa 235  Q
    ||  ||||||||||| |||||| |   |||| |||||||||| ||||||| |||| || |||| | |||||||    
T  39460637 ttcaaatcttcatatccacactcttcgtgaaagagacaacgtagattcaaatcagttgcagcagcagactgaa 39460709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 39483547 - 39483704
Alignment:
Q  63 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg 162  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| || ||    |||||| || | || |||| |||||  |||||||||| ||||||    
T  39483547 ccttcgttgttgacatgttctgcaccaccatgattgatgttgccaatgagttcaatgtccctacgctcgttttctacactttcagtgttgcttcccttgg 39483646  T
Q  163 tttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctg 220  Q
    |||||||||| || |||||||| |   ||||||||||||  ||||||  |||||||||    
T  39483647 tttgaatctttatcttcacactcttcgtgaacgagacaatatcgatttgactcagctg 39483704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 39472325 - 39472471
Alignment:
Q  68 gttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttga 167  Q
    |||||||||||||||||||| |||||||||||||||||||| || || || |||||| || |||| |||||||||||  ||||||| |||||||| ||||    
T  39472325 gttgttgacatgttctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 39472424  T
Q  168 atcttcatattcacactttgtttgaacgagacaacgtcgattcaact 214  Q
     | ||||| || ||||| |   | |||||||||| ||| ||||||||    
T  39472425 gttttcatctttacactcttcgtcaacgagacaatgtctattcaact 39472471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 220
Target Start/End: Original strand, 39475796 - 39475953
Alignment:
Q  63 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg 162  Q
    ||||||||||||||||||||||||||| ||||||  |||||||||| || ||    |||||| || | || |||||||||||  ||||||||| ||||||    
T  39475796 ccttcgttgttgacatgttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttctggtgttgcttcccttgg 39475895  T
Q  163 tttgaatcttcatattcacactttgtttgaacgagacaacgtcgattcaactcagctg 220  Q
    |||||||||| |  || ||||| |   |||||||||||| |||||||| |||||||||    
T  39475896 tttgaatctttacctttacactcttcgtgaacgagacaatgtcgattcgactcagctg 39475953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 194
Target Start/End: Original strand, 39454925 - 39455054
Alignment:
Q  65 ttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtt 164  Q
    |||||||||||||||| ||||||   |||||||||||||||||| || || ||| ||||| |  | || ||||||||||| ||||| |||||||||||||    
T  39454925 ttcgttgttgacatgtcctgcacagccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagtgtagctttccttggtt 39455024  T
Q  165 tgaatcttcatattcacactttgtttgaac 194  Q
    ||| |||  || |||||| | |||||||||    
T  39455025 tgactctctatcttcacaatatgtttgaac 39455054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 183
Target Start/End: Complemental strand, 43312419 - 43312299
Alignment:
Q  63 ccttcgttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttgg 162  Q
    ||||||||||||||||||||||||||| |||||||||||| || || || |||   |||||| |  | || | |||||||||  ||||||||||||||||    
T  43312419 ccttcgttgttgacatgttctgcaccaccatgattgatgtagctaatgactttggtgtcccttccctcgtctacttcacttccggtgttgctttccttgg 43312320  T
Q  163 tttgaatcttcatattcacac 183  Q
    |||||  |||||| |||||||    
T  43312319 tttgatgcttcattttcacac 43312299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 39454859 - 39454892
Alignment:
Q  20 aaaccaaacgtcaaacaagccgtctctaacctca 53  Q
    ||||||||||||||||||||||| ||||||||||    
T  39454859 aaaccaaacgtcaaacaagccgtatctaacctca 39454892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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