View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_113 (Length: 250)
Name: NF8986_low_113
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_113 |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 97 - 235
Target Start/End: Complemental strand, 4638987 - 4638843
Alignment:
| Q |
97 |
aaatagaaacatatttttgagtagatttttctacgctcaagtgtactcctaccactcattcgttttaaatc-------tccctatcaaaggaaagtttga |
189 |
Q |
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| T |
4638987 |
aaatagaaacatatttttgagtagatttttctacgctcaagtgtactcctaccactcattcg-tttaaatctccctaatccctatcaaaggaaagtttga |
4638889 |
T |
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| Q |
190 |
cgatttcaaagttgtgactaatttcgtgttcagtgcctattgatgt |
235 |
Q |
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| T |
4638888 |
cgatttcaaagttgtgactaatttcgtggccactgcctattgatgt |
4638843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 4632719 - 4632592
Alignment:
| Q |
19 |
gtattgttgtgattaaaatttcagacctcgtgagcatttgtcatggatatcatagnnnnnnnggctaacaagaaccaa-------aaatagaaacatatt |
111 |
Q |
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| T |
4632719 |
gtattgttgtgattacaatttccgacctcgtgagcatttgtcatggatatcatagtttttttggctaacaagaaccaaaaggatcaaatagaaacatatt |
4632620 |
T |
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| Q |
112 |
tttgagtagatttttctacgctcaagtg |
139 |
Q |
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| T |
4632619 |
tttgagtagatttttctacgctcaagtg |
4632592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 4669355 - 4669219
Alignment:
| Q |
108 |
tatttttgagtagatttttctacgctcaagtgtactcctaccactcattcgtttt------aaatctcc----ctatcaaaggaaagtttgacgatttca |
197 |
Q |
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| T |
4669355 |
tatttctgaatagatatttctatgctcaagtgtactcagaccactcattcgttttatatcgaaatctccttatctttcaaaagaaagtttgacgatttca |
4669256 |
T |
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| Q |
198 |
aagttgtgactaatttcgtgttcagtgcctattgatgt |
235 |
Q |
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| T |
4669255 |
aagttgt-actaatttcatggacggtccctattgatgt |
4669219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Complemental strand, 4645456 - 4645372
Alignment:
| Q |
134 |
caagtgtactcctaccactcattcgttttaaa-tctccctat----caaaggaaagtttgacgatttcaaagttgtgactaattt |
213 |
Q |
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| T |
4645456 |
caagtgaactcctaccactcattcgttttaaattatccctatcatccaaaggaaagtttgaagatttcaaacttgcaactaattt |
4645372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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