View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_116 (Length: 243)
Name: NF8986_low_116
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_116 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36903785 - 36903565
Alignment:
| Q |
1 |
catttccacagtcctctccttcaacttctttattgtacttctcaatgacatctgtttattgttcaggttcgcaatagtttgactcaactctttaactttt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36903785 |
catttccacagtcttctccttcaacttctttattgtacttctcaatgacatctgtttattgttcaggttcgcaatagtttgacgcaactctttaactttt |
36903686 |
T |
|
| Q |
101 |
acatccacctcctgaacagaaggcaattccctttccctcgcttcattgcattcagcaatcgccaatttcgactataacagaatgaaaatctatcaaataa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36903685 |
gcatccacctcctgaacagaaggcaattccctttccctcgcttcattgcattcagcaatcgccaatttcaactataacagaatgaaaatctatcaaataa |
36903586 |
T |
|
| Q |
201 |
aacaccaatacaaacacacac |
221 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
36903585 |
aacaccaataccaacacacac |
36903565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 36891591 - 36891786
Alignment:
| Q |
1 |
catttccacagtcctctccttcaacttctttattgtacttctcaatgacatctgtttattgttcaggttcgcaatagtttgactcaactctttaactttt |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | | ||||| ||||| ||||| ||||||||||| |||||| |||||| || |||||| || | | |
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| T |
36891591 |
catttccacagttttctccttcaacttctttaaatcagtcctcaacgacatttgtttgttgttcaggtttgcaatattttgacgcagctctttcacatgt |
36891690 |
T |
|
| Q |
101 |
acatccacctcctgaacagaaggcaattccctttccctcgcttcattgcattcagcaatcgccaatttcgactataacagaatgaaaatctatcaa |
196 |
Q |
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|||| |||||||||||| |||||| |||||| |||||||||| |||||||| ||||||||||| || ||||||||| |||||||||| ||||| |
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| T |
36891691 |
gcatcgacctcctgaacataaggcatctcccttcccctcgcttccttgcattcgtcaatcgccaatgtcaactataacataatgaaaatcaatcaa |
36891786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 17479294 - 17479489
Alignment:
| Q |
1 |
catttccacagtcctctccttcaacttctttattgtacttctcaatgacatctgtttattgttcaggttcgcaatagtttgactcaactctttaactttt |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||||| || | |||| ||||||||||| ||||||||||| | ||||||||||| || ||||||||||||| |
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| T |
17479294 |
catttccacattctcctccttcaacttctttaaattagtcgtcaacgacatctgtttgttgttcaggtttggaatagtttgacgcagctctttaactttt |
17479393 |
T |
|
| Q |
101 |
acatccacctcctgaacagaaggcaattccctttccctcgcttcattgcattcagcaatcgccaatttcgactataacagaatgaaaatctatcaa |
196 |
Q |
| |
|
||||||||||||||||| | |||| |||||||| ||||||||| | ||||||||||||||| |||| |||||||| ||||||||||| ||||| |
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| T |
17479394 |
gcatccacctcctgaacaaatggcatctccctttctctcgcttcaaaggattcagcaatcgccagtttcaactataaccgaatgaaaatcaatcaa |
17479489 |
T |
|
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