View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_122 (Length: 237)
Name: NF8986_low_122
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_122 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 47896152 - 47895940
Alignment:
| Q |
17 |
tcaaacttttcatgttgctgcggtcatctatggataaagagtgtccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcagaagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896152 |
tcaaacttttcatgttgctgcggtcatctatggataaagagtgtccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcagaagc |
47896053 |
T |
|
| Q |
117 |
gtgaagagccattccatcatctatttgtcgttcttgaagagtaatcagcggtccttctatattgggagatgatgcgggctctttcactttttctatatta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896052 |
gtgaagagccattccatcatctatttgtcgttcttgaagagtaattagcggtccttctatattgggagatgatgcgggctctttcactttttctatatta |
47895953 |
T |
|
| Q |
217 |
acaccaaactcga |
229 |
Q |
| |
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||| || |||||| |
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| T |
47895952 |
acatcagactcga |
47895940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 31213322 - 31213523
Alignment:
| Q |
17 |
tcaaacttttcatgttgctgcggtcatctatggataaagagtgtccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcagaagc |
116 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31213322 |
tcaaactttccatgttgttgcggtcatctatggataaagagtgtccgttattcacctttctaggaatgttatcgcattgga-gtgtgctgtatcagaagc |
31213420 |
T |
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| Q |
117 |
gtgaagagccattccatcatctatttgtcgttcttgaagagtaatcagcggtccttctatattgggagatgatgcgggctctttcactttttctatatta |
216 |
Q |
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| T |
31213421 |
gtgaa----------atcatctatttgtcgttcttgaagagtaatcagcggtccttctatattgggagatgatgcggactctttcactttttctatatta |
31213510 |
T |
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| Q |
217 |
acaccaaactcga |
229 |
Q |
| |
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||| || |||||| |
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| T |
31213511 |
acatcagactcga |
31213523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 31219077 - 31219278
Alignment:
| Q |
17 |
tcaaacttttcatgttgctgcggtcatctatggataaagagtgtccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcagaagc |
116 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31219077 |
tcaaactttccatgttgttgcggtcatctatggataaagagtgtccgttattcacctttctaggaatgttatcgcattgga-gtgtgctgtatcagaagc |
31219175 |
T |
|
| Q |
117 |
gtgaagagccattccatcatctatttgtcgttcttgaagagtaatcagcggtccttctatattgggagatgatgcgggctctttcactttttctatatta |
216 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31219176 |
gtgaa----------atcatctatttgtcgttcttgaagagtaatcagcggtccttctatattgggagatgatgcggactctttcactttttctatatta |
31219265 |
T |
|
| Q |
217 |
acaccaaactcga |
229 |
Q |
| |
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||| || |||||| |
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| T |
31219266 |
acatcagactcga |
31219278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 4958568 - 4958770
Alignment:
| Q |
17 |
tcaaacttttcatgttgctgcggtcatctatggataaagagtgtccgttattcacctttctaggaatgttatcgcattggaggtgtgctgtatcagaagc |
116 |
Q |
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|||| |||| ||||| |||| | ||||||||||||||||| | | | ||||| ||| ||| | |||||||||| |||||||||||||||||||||||| |
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| T |
4958568 |
tcaagctttccatgtagctgtgttcatctatggataaagaatattcagtattcccctctctggcaatgttatcggattggaggtgtgctgtatcagaaga |
4958667 |
T |
|
| Q |
117 |
gtgaagagccattccatcatctatttgtcgttcttgaagagtaatcagcggtccttctatattgggagatgatgcgggctctttcactttttctatatta |
216 |
Q |
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| T |
4958668 |
gtgaaaagccactccatctgctatttgtcgttcttgaagagcaactatcggtccttctatattaggagatgacacaggctctccaactttttctatatta |
4958767 |
T |
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| Q |
217 |
aca |
219 |
Q |
| |
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||| |
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| T |
4958768 |
aca |
4958770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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