View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_126 (Length: 234)

Name: NF8986_low_126
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_126
NF8986_low_126
[»] chr4 (15 HSPs)
chr4 (1-215)||(6838462-6838676)
chr4 (32-213)||(6587257-6587438)
chr4 (29-215)||(6754302-6754488)
chr4 (25-215)||(6761564-6761756)
chr4 (25-215)||(6823513-6823702)
chr4 (52-215)||(6816453-6816616)
chr4 (53-215)||(6531335-6531497)
chr4 (52-215)||(6652140-6652303)
chr4 (25-212)||(5596914-5597101)
chr4 (25-215)||(6797566-6797753)
chr4 (97-215)||(6620464-6620582)
chr4 (101-215)||(6729400-6729514)
chr4 (78-215)||(6544375-6544512)
chr4 (30-215)||(6497470-6497655)
chr4 (146-215)||(6740435-6740504)
[»] scaffold0552 (1 HSPs)
scaffold0552 (52-215)||(7217-7380)
[»] scaffold0286 (1 HSPs)
scaffold0286 (52-215)||(7743-7906)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 6838462 - 6838676
Alignment:
Q  1 ttggatcctctaaattactaattccattttacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6838462 ttggatcctctaaattactaattccattttacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagcttt 6838561  T
Q  101 agttgcaaaggttgttccataatatttgatatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6838562 agttgcaaaggttgttccataatatttgatatcccaacaataaaggggcgaaacctgaagagtatgatattgttcattgtctattactcttccccggaga 6838661  T
Q  201 acatagcatcagaag 215  Q
    |||||||||||||||    
T  6838662 acatagcatcagaag 6838676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 6587438 - 6587257
Alignment:
Q  32 cagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttgata 131  Q
    ||||||||||||||||| | |||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6587438 cagactgcagatgagacttgggattcgtttttcctcccctgtgacaataattctgaatggtcaagctttagttgcaaaggttgttccataatatttgata 6587339  T
Q  132 tcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcaga 213  Q
    |||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||||||| |||| |||||| |||||||    
T  6587338 tcccaacaataaagggacgaaacctgaagagtatgatcttgttcgttgtctattactcttcctcggaaaacataacatcaga 6587257  T

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Target: chr4; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 29 - 215
Target Start/End: Original strand, 6754302 - 6754488
Alignment:
Q  29 ttacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttg 128  Q
    |||||||||| ||||||||| | ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6754302 ttacagactgaagatgagacttgggattcatttttgctcccctgtgacaataattctgaatggtcaagctttagttgcaaaggttgttccataatatttg 6754401  T
Q  129 atatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    |||||||| |||| |||||| ||| ||| ||||||||||| |||||||| ||||||||||||| ||||||||||||| |||| ||||    
T  6754402 atatcccaccaatgaaggggagaaacctaaagagtatgatgttgttcatcgtctattactctttcccggagaacataacatcggaag 6754488  T

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Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 6761564 - 6761756
Alignment:
Q  25 cattttacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataata 124  Q
    |||||||||||||||||||| ||| | |||||||||||| ||  | |||||||||||||   ||||||||| ||||||||||||||||||||||||||||    
T  6761564 cattttacagactgcagatgggacttgggattcatttttactctcatgtgacaataattccaaatggtcaacctttagttgcaaaggttgttccataata 6761663  T
Q  125 tttgatatcccaacaat--aaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    |||||| ||||||||||  ||||||||| | ||||||||||||||| |||||| ||||||||||||||||| |  | |||||| |||||||||    
T  6761664 tttgatttcccaacaatgaaaaggggcgtaacctgaagagtatgatgttgttcgttgtctattactcttcctcataaaacataacatcagaag 6761756  T

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Target: chr4; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 6823513 - 6823702
Alignment:
Q  25 cattttacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataata 124  Q
    ||||||||||||| |||||||||  | |||||||||||| |  |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  6823513 cattttacagactacagatgagatttgggattcatttttccc-ccctgtgacaataattctgaatggtcaacctttagttgcaaaggttgttccataata 6823611  T
Q  125 tttgatatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    |||||||||||  |||| ||||| |||| ||||||||||||||| |||||||  |||||| ||||| || |||| |||||| |||| ||||    
T  6823612 tttgatatccctgcaatgaagggccgaaacctgaagagtatgatgttgttcaccgtctatcactctccctcggaaaacataacatctgaag 6823702  T

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Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 6816453 - 6816616
Alignment:
Q  52 ggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttgatatcccaacaataaaggggcga 151  Q
    |||||| |||| ||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||   | |    
T  6816453 ggattcgttttcgctcccctatgacaataattctgaatggtcaacctttagttgcaaaggttgttccataatatttgatatcccaataataaagccacta 6816552  T
Q  152 agcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    | |||||||||||||| ||| ||||| ||||||||||||||| |||| ||||||  ||||||||    
T  6816553 aacctgaagagtatgagattattcatcgtctattactcttcctcggaaaacataatatcagaag 6816616  T

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Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 215
Target Start/End: Complemental strand, 6531497 - 6531335
Alignment:
Q  53 gattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttgatatcccaacaataaaggggcgaa 152  Q
    |||||||||||||| |||||||||||||  | ||| |||| || ||||||||||||||||| ||| |||||||||||| |||||||||| |||||| |      
T  6531497 gattcatttttgctcccctgtgacaatatatctgattggttaacctttagttgcaaaggttcttctataatatttgatgtcccaacaatgaaggggagtg 6531398  T
Q  153 gcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
     | ||||||||||||| |||||| | |||||||||||| | |||||||||||| || ||||||    
T  6531397 acttgaagagtatgatgttgttcgtcgtctattactctactccggagaacataacagcagaag 6531335  T

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Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 6652140 - 6652303
Alignment:
Q  52 ggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttgatatcccaacaataaaggggcga 151  Q
    |||||||||| |||| ||||||||||| |||| ||| |||  || |||  |||||||||| |||| |||||| |||||| |||||||||| ||||||||     
T  6652140 ggattcatttgtgctcccctgtgacaacaattctgattggcaaaccttccgttgcaaaggctgttgcataatgtttgatctcccaacaatgaaggggcgt 6652239  T
Q  152 agcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    | ||||||||||||||| |||||| | ||||||||||||||||| || | |||||| |||||||    
T  6652240 aacctgaagagtatgatgttgttcgtcgtctattactcttccccagaaagcatagcttcagaag 6652303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 5597101 - 5596914
Alignment:
Q  25 cattttacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataata 124  Q
    ||||||| ||||||||| || ||| | |||||||||||||||  | |||||||| | ||   |  |||||| | |||||||||| |||||||||||| ||    
T  5597101 cattttatagactgcaggtgggacttgggattcatttttgctcacatgtgacaagagttccaatcggtcaaccgttagttgcaatggttgttccatacta 5597002  T
Q  125 tttgatatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcag 212  Q
    |||||  |||||| ||| |||||||| | ||||||||||||||| |||| | ||||||||||||||||| | ||||||||| ||||||    
T  5597001 tttgagctcccaaaaatgaaggggcgtaacctgaagagtatgatgttgtccgttgtctattactcttcctcagagaacataacatcag 5596914  T

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Target: chr4; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 25 - 215
Target Start/End: Original strand, 6797566 - 6797753
Alignment:
Q  25 cattttacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataata 124  Q
    |||| ||||||||| ||||| ||| | ||||||||||||||| || |||||| |||| | |||||||| || ||| | ||||||||||||||| |||| |    
T  6797566 cattgtacagactgtagatgggacttgggattcatttttgctcccttgtgactataagtctgaatggttaaccttcaattgcaaaggttgttcgataaaa 6797665  T
Q  125 tttgatatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    |||||| |||||| ||| ||   | | | ||||||||||||||| || | | |||||||||||||||||||||| | |||| |||||||||    
T  6797666 tttgatgtcccaaaaatgaa---gagtaacctgaagagtatgatgttatccgttgtctattactcttccccggaaatcataacatcagaag 6797753  T

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Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 6620582 - 6620464
Alignment:
Q  97 ctttagttgcaaaggttgttccataatatttgatatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccg 196  Q
    |||||||||| |||| |||||||| |||||||||||||||||||| |||||||| | ||||||||||||||| |||| | |  | ||||||||||| | |    
T  6620582 ctttagttgccaaggatgttccattatatttgatatcccaacaatgaaggggcgtaacctgaagagtatgatgttgtccgtcatttattactcttcacag 6620483  T
Q  197 gagaacatagcatcagaag 215  Q
    ||||||||| |||||||||    
T  6620482 gagaacataacatcagaag 6620464  T

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Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 101 - 215
Target Start/End: Original strand, 6729400 - 6729514
Alignment:
Q  101 agttgcaaaggttgttccataatatttgatatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggaga 200  Q
    ||||| || |||||||| |||||||||||| |||||||||| |||||| | | |||||||||||| || |||||| ||||||||||||||||||| || |    
T  6729400 agttgtaacggttgttctataatatttgatgtcccaacaatgaaggggagtaacctgaagagtataatgttgttcgttgtctattactcttccccagaaa 6729499  T
Q  201 acatagcatcagaag 215  Q
    ||||| |||||||||    
T  6729500 acataacatcagaag 6729514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 215
Target Start/End: Complemental strand, 6544512 - 6544375
Alignment:
Q  78 ataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttgatatcccaacaataaaggggcgaagcctgaagagtatgatattgttcat 177  Q
    |||||| ||| ||||||| |||||||||| | || || ||||||| |||||||||||||||||| |||||||| | | ||||||||||||| |||| | |    
T  6544512 ataattctgagtggtcaacctttagttgccatggatgctccataagatttgatatcccaacaatgaaggggcgtaacttgaagagtatgatgttgtccgt 6544413  T
Q  178 tgtctattactcttccccggagaacatagcatcagaag 215  Q
     |||||||||||| | |||||||||||| || ||||||    
T  6544412 cgtctattactctactccggagaacataacagcagaag 6544375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 6497655 - 6497470
Alignment:
Q  30 tacagactgcagatgagacatcggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttga 129  Q
    ||||||||||| ||| ||| | |  ||||||||| || |||| ||| ||||| |  ||||||| || ||| ||||||||||||| ||| |||| ||||||    
T  6497655 tacagactgcaaatgggacttggagttcattttttctcccctctgataataactccgaatggttaaccttcagttgcaaaggttcttctataaaatttga 6497556  T
Q  130 tatcccaacaataaaggggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    | |||||||||| |||||| | | | ||||||||||||| ||||||  || ||||||||| || ||||| |||||| |||||||||    
T  6497555 tgtcccaacaatgaaggggagtaacttgaagagtatgatgttgttcgctgcctattactcatcaccggacaacataacatcagaag 6497470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 6740435 - 6740504
Alignment:
Q  146 gggcgaagcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    ||||||| ||||||||||||||| || || |||||||| |||||||| |  ||||||||| |||||||||    
T  6740435 gggcgaaacctgaagagtatgatgttatttattgtctactactcttctctcgagaacataacatcagaag 6740504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0552 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0552
Description:

Target: scaffold0552; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 215
Target Start/End: Complemental strand, 7380 - 7217
Alignment:
Q  52 ggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttgatatcccaacaataaaggggcga 151  Q
    |||||| |||| ||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||   | |    
T  7380 ggattcgttttcgctcccctatgacaataattctgaatggtcaacctttagttgcaaaggttgttccataatatttgatatcccaataataaagccacta 7281  T
Q  152 agcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    | |||||||||||||| ||| ||||| ||||||||||||||| |||| ||||||  ||||||||    
T  7280 aacctgaagagtatgagattattcatcgtctattactcttcctcggaaaacataatatcagaag 7217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 215
Target Start/End: Original strand, 7743 - 7906
Alignment:
Q  52 ggattcatttttgcttccctgtgacaataattgtgaatggtcaagctttagttgcaaaggttgttccataatatttgatatcccaacaataaaggggcga 151  Q
    |||||||||| |||| ||||||||||| |||| ||| |||  || |||  |||||||||| |||| |||||| |||||| |||||||||| ||||||||     
T  7743 ggattcatttgtgctcccctgtgacaacaattctgattggcaaaccttccgttgcaaaggctgttgcataatgtttgatctcccaacaatgaaggggcgt 7842  T
Q  152 agcctgaagagtatgatattgttcattgtctattactcttccccggagaacatagcatcagaag 215  Q
    | ||||||||||||||| |||||| | ||||||||||||||||| || | |||||| |||||||    
T  7843 aacctgaagagtatgatgttgttcgtcgtctattactcttccccagaaagcatagcttcagaag 7906  T

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