View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8986_low_136 (Length: 225)
Name: NF8986_low_136
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_136 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 2927977 - 2928189
Alignment:
| Q |
13 |
gctcctcgtagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgt |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2927977 |
gctcctcgtagactttaggagccacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgt |
2928076 |
T |
|
| Q |
113 |
gaataaattgggttgagaacaaacataagcatatatttaacaaagaagacaacattgaatgacagaaaggaccattagaacacagcagatgcagcacaga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928077 |
gaataaattgggttgagaacaaacataagcatatatgtaacaaagaagacaacattgaatgacagaaaggaccattagaacacagcagatgcagcacaga |
2928176 |
T |
|
| Q |
213 |
aaaaagccatacc |
225 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2928177 |
aaaaagccatacc |
2928189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 2311293 - 2311091
Alignment:
| Q |
13 |
gctcctcgtagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgt |
112 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
2311293 |
gctcctcgtagactttaggtgccacccgaggatcatagccagctgctgccattagttgaagcccgatgtaatcagcttcaaattcaaacatgcaaattgt |
2311194 |
T |
|
| Q |
113 |
gaataaattgggttgagaacaaacataagcatatatttaacaaagaagacaacattgaatgacagaaaggaccattagaacacagcagatgcagcacaga |
212 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| | || ||||||||||||||||||||| ||||||||||| || ||||||||||| ||||| |
|
|
| T |
2311193 |
gaataaagtgggttgagaacaagcataagcatatatgt----aatgagacaacattgaatgacagaagggaccattagatcatagcagatgcaggacaga |
2311098 |
T |
|
| Q |
213 |
aaaaagc |
219 |
Q |
| |
|
||||||| |
|
|
| T |
2311097 |
aaaaagc |
2311091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 10173717 - 10173789
Alignment:
| Q |
42 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtga |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||| |||||||||||| || || ||||||||| |
|
|
| T |
10173717 |
ggatcatagccagcggctgccattagtagaagcccaatgtaatccgcttcaaattcacacttgtaaattgtga |
10173789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 1237932 - 1238024
Alignment:
| Q |
42 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaa |
134 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1237932 |
ggatcatagccaactgctgccattagtagaagcccaatgtaatccgcttcaaattcaaacctgcaaattgtgaataaattggattgagaacaa |
1238024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 29088860 - 29088974
Alignment:
| Q |
38 |
ccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaaca |
137 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| || |||||| ||||||||||||| |||||||||||||||| ||||| ||||||| || || |
|
|
| T |
29088860 |
ccgaggatcatagccagctgatgccattagtagaagcccaatgtaatcaacttcaaattcaaaactgcaaattgtgaatacattggattgagaataagca |
29088959 |
T |
|
| Q |
138 |
taagcatatatttaa |
152 |
Q |
| |
|
| || |||||||||| |
|
|
| T |
29088960 |
tgagtatatatttaa |
29088974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 1175509 - 1175417
Alignment:
| Q |
42 |
ggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaa |
134 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1175509 |
ggatcatagccagctgctgccatcagtagaagcccaatgtaatcagcttcatattcaaacctgcaaattgtgaataaattttgttgagaacaa |
1175417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 138
Target Start/End: Original strand, 794359 - 794442
Alignment:
| Q |
55 |
ctgctgccattagtagaagcccgatataatcagcttcaaattcaaacctgcaaattgtgaataaattgggttgagaacaaacat |
138 |
Q |
| |
|
||||||| ||||||| |||||| || ||||| ||||||||||||||| |||||| |||||| ||||| |||||||||||||| |
|
|
| T |
794359 |
ctgctgcgattagtataagcccaatgtaatcgtattcaaattcaaaccttcaaattatgaatatattggattgagaacaaacat |
794442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 23906457 - 23906529
Alignment:
| Q |
21 |
tagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgatataatcagcttcaa |
93 |
Q |
| |
|
||||||||||| || ||||| |||||||||||||| | ||| | || |||||||| || ||||||||||||| |
|
|
| T |
23906457 |
tagactttaggtgccacccggggatcatagccagccgatgcaagtaatagaagccgaatgtaatcagcttcaa |
23906529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 43286724 - 43286845
Alignment:
| Q |
21 |
tagactttaggagcaacccgaggatcatagccagctgctgccattagtagaagcccgata--------taatcagcttcaaattcaaacctgcaaattgt |
112 |
Q |
| |
|
||||||||||| |||| || |||||||||||||| | || |||||||||||||| ||| ||||||||||||||||||| ||| |||||| | |
|
|
| T |
43286724 |
tagactttaggtgcaagtcggggatcatagccagccgatgtcattagtagaagccagattgcccaatgtaatcagcttcaaattcaatcctacaaattat |
43286823 |
T |
|
| Q |
113 |
g-aataaattgggttgagaaca |
133 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
43286824 |
gaaataaattgggttgagaaca |
43286845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University