View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_14 (Length: 672)

Name: NF8986_low_14
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_14
NF8986_low_14
[»] chr3 (17 HSPs)
chr3 (15-656)||(23466730-23467366)
chr3 (250-508)||(23426857-23427118)
chr3 (562-656)||(23427143-23427237)
chr3 (539-656)||(23400736-23400853)
chr3 (15-115)||(23420263-23420362)
chr3 (539-655)||(23452689-23452805)
chr3 (539-632)||(23350472-23350565)
chr3 (229-298)||(23350029-23350098)
chr3 (539-655)||(23470907-23471023)
chr3 (16-112)||(39439859-39439953)
chr3 (539-650)||(23403193-23403301)
chr3 (539-650)||(23461797-23461905)
chr3 (539-655)||(23438407-23438523)
chr3 (21-93)||(25045413-25045484)
chr3 (27-112)||(32278405-32278488)
chr3 (15-63)||(27011216-27011264)
chr3 (541-609)||(23433899-23433967)
[»] scaffold0022 (2 HSPs)
scaffold0022 (16-97)||(44132-44212)
scaffold0022 (16-97)||(77853-77933)
[»] scaffold0201 (1 HSPs)
scaffold0201 (539-655)||(9969-10082)
[»] chr4 (9 HSPs)
chr4 (16-97)||(48084718-48084798)
chr4 (16-112)||(46944082-46944176)
chr4 (23-112)||(50859210-50859297)
chr4 (21-93)||(35033834-35033905)
chr4 (16-75)||(3121264-3121323)
chr4 (16-79)||(31227734-31227797)
chr4 (21-62)||(22405077-22405118)
chr4 (15-112)||(35292080-35292175)
chr4 (21-63)||(4292686-4292728)
[»] chr2 (4 HSPs)
chr2 (16-80)||(7444706-7444770)
chr2 (21-63)||(44246372-44246414)
chr2 (21-63)||(28219059-28219101)
chr2 (15-64)||(10354290-10354339)
[»] chr5 (4 HSPs)
chr5 (21-112)||(30084941-30085030)
chr5 (16-64)||(11617270-11617318)
chr5 (21-63)||(4943568-4943610)
chr5 (25-82)||(9159479-9159536)
[»] chr1 (8 HSPs)
chr1 (15-64)||(48046433-48046482)
chr1 (21-112)||(15581607-15581696)
chr1 (15-58)||(16302758-16302801)
chr1 (16-63)||(49764933-49764980)
chr1 (21-115)||(41404109-41404201)
chr1 (16-62)||(42365918-42365964)
chr1 (21-63)||(42934260-42934302)
chr1 (15-63)||(50678181-50678229)
[»] chr7 (2 HSPs)
chr7 (21-100)||(19625458-19625536)
chr7 (15-93)||(12633459-12633539)
[»] chr8 (1 HSPs)
chr8 (16-60)||(38679777-38679821)
[»] scaffold0227 (1 HSPs)
scaffold0227 (21-63)||(237-279)
[»] scaffold0224 (1 HSPs)
scaffold0224 (21-63)||(12469-12511)
[»] scaffold0127 (1 HSPs)
scaffold0127 (21-115)||(30134-30226)
[»] scaffold0110 (1 HSPs)
scaffold0110 (21-63)||(38619-38661)


Alignment Details
Target: chr3 (Bit Score: 593; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 15 - 656
Target Start/End: Original strand, 23466730 - 23467366
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatgaa 114  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23466730 ggaatagaatggaatgtagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttg-gggtgtatgcaatgaa 23466828  T
Q  115 aaaacaacaatcttcctagtaaatactataaaacaacaatcatcaccaatggtggaaattaatcaacaaaaattgaaaaagacttccataaaaatgagtg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23466829 aaaacaacaatcttcctagtaaatactataaaacaacaatcatcaccaatggtggaaattaatcaacaaaaattgaaaaagacttccataaaaatgagtg 23466928  T
Q  215 cctcaaaagtaaccttcaaaagattcaattgataagcaataatccagcttaacattgagcttctcatacgtagcattccaatttattatgtctgaattac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23466929 cctcaaaagtaaccttcaaaagattcaattgataagcaataatccagcttaacattgagcttctcatacgtagcattccaatttattatgtctgaattac 23467028  T
Q  315 aagcaatcagaagttgaggacaagcctatagaagctcaaatttttctgaataaaaccataccctacacctaattagggctctatgaagcctctaattaat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    ||||    
T  23467029 aagcaatcagaagttgaggacaagcctatagaagctcaaatttttctgaataaaaccataccctacaccgaattagggctctatgaagcctc----taat 23467124  T
Q  415 actcgaaacaatagaagaagcattggggctctaagactaagaaggagaagatgaaaagaaactagctacaaaattaaaacatgtgttttcattgattaat 514  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23467125 actcgaaacaatcgaagaagcattggggctctaagactaagaaggagaagatgaaaagaaactagctacaaaattaaaacatatgttttcattgattaat 23467224  T
Q  515 taaattcctaaagatacaacacacttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatc 614  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467225 tacattcctaaagatacaacacacttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatc 23467324  T
Q  615 ataagtttcactatcttgtctgttgtgaacatgccagcatac 656  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  23467325 ataaatttcactatcttgtctgttgtgaacatgccagcatac 23467366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 250 - 508
Target Start/End: Original strand, 23426857 - 23427118
Alignment:
Q  250 gcaataatccagcttaacattgagcttctcatacgtagcattccaatttattatgtctgaattacaagcaatcagaagttgaggacaagcctatagaagc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23426857 gcaataatccagcttaacattgagcttctcatacgtagcattccaatttattatgtctgaattacaagcaatcagaagttcaggacaagcctatagaagc 23426956  T
Q  350 tcaaatttttctgaataaaaccataccctacacctaattagggctctatgaagcctctaattaatactcgaaacaatagaagaagc--------attggg 441  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    |||||||||||||||||||||||||        ||||||    
T  23426957 tcaaatttttctaaataaaaccataccctacaccgaattagggctctatgaagcctc----taatactcgaaacaatagaagaagcatctagtaattggg 23427052  T
Q  442 gctctaagactaagaaggagaagatgaaaagaaactagctacaaaattaaaacatgtgttttcattg 508  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  23427053 gctctaagactaagaaggagaagatg-aaaggaactagctacaaaattaaaacatgtgttttcattg 23427118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 562 - 656
Target Start/End: Original strand, 23427143 - 23427237
Alignment:
Q  562 aattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgttgtgaacatgccagcatac 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  23427143 aattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataactttcactatattgtctgttgtgaacatgccagcatac 23427237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 539 - 656
Target Start/End: Original strand, 23400736 - 23400853
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 638  Q
    |||||||||| ||||| |||| |||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||    
T  23400736 ttatcccctccgttgaccaccgcaatagtttcttgtgaccttgaagtagaaactgaaatgataagttgcaaaaatcataacttccactatcttgtctgtt 23400835  T
Q  639 gtgaacatgccagcatac 656  Q
    |||||||||| |||||||    
T  23400836 gtgaacatgctagcatac 23400853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 23420263 - 23420362
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatgaa 114  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| | || ||||||||||||||||    
T  23420263 ggaatagaatggagtggagtgtaatggaactcattacatccaataccacctatttaaccaattttccaattcctcccattgtg-gggtgtatgcaatgaa 23420361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 539 - 655
Target Start/End: Original strand, 23452689 - 23452805
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 638  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||| ||||||||| |||| | || || | |||||| ||||    
T  23452689 ttatcccctctgttgaccaccacaattgttccttttgaccttgaagtaggaactgaaatgataggttgcaaaagtcatgacttccagtttcttgtttgtt 23452788  T
Q  639 gtgaacatgccagcata 655  Q
    || | ||| ||||||||    
T  23452789 gtaaccattccagcata 23452805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 539 - 632
Target Start/End: Original strand, 23350472 - 23350565
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttg 632  Q
    |||||||||| || || |||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||| || |||| |||||    
T  23350472 ttatcccctcagtcgaccaccacaatttttccttgtgaccttgaagtataaattgaaatgataggttgcaaaagtcataacttccactttcttg 23350565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 23350029 - 23350098
Alignment:
Q  229 ttcaaaagattcaattgataagcaataatccagcttaacattgagcttctcatacgtagcattccaattt 298  Q
    |||||||||||||| ||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||    
T  23350029 ttcaaaagattcaactgaaaagcaataatccaggttaccattcagcttctcatacgtagcattccaattt 23350098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 539 - 655
Target Start/End: Original strand, 23470907 - 23471023
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 638  Q
    ||||||||||  |||| ||||  |||| ||| ||| ||||||||||||  |||||||||||||||||||||| ||||||| || || | |||||||||||    
T  23470907 ttatcccctcctttgaccaccgtaattcttcattgggaccttgaagtatgaattgaaatgataagttgcaaatatcataacttccattttcttgtctgtt 23471006  T
Q  639 gtgaacatgccagcata 655  Q
    || | ||||||| ||||    
T  23471007 gtaaccatgccaacata 23471023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 39439953 - 39439859
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatg 112  Q
    |||| |||||||||||||||| |||||||||||| |||||||||||||| ||| |||||| ||| || |||| ||||||||| |||||||| |||||    
T  39439953 gaatggaatggaatggagtgtgatggaactcattccatccaataccacccattaaaccaaattttca-ttccccccaatttg-gggtgtatccaatg 39439859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 539 - 650
Target Start/End: Original strand, 23403193 - 23403301
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 638  Q
    |||||||||||||||| ||||||| || ||| ||| ||||||||||||  |||||||||||||||||   | |||||||| || |||| |||||| ||||    
T  23403193 ttatcccctctgttgaccaccacagttcttcattgggaccttgaagtatgaattgaaatgataagtt---acaatcataacttccactttcttgtatgtt 23403289  T
Q  639 gtgaacatgcca 650  Q
    || | |||||||    
T  23403290 gtaaccatgcca 23403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 539 - 650
Target Start/End: Original strand, 23461797 - 23461905
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 638  Q
    |||||||||||||||| |||||||||| ||| ||| ||||||||||||  |||| ||||||||||||   | |||||||| || |||| |||||| ||||    
T  23461797 ttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaatgataagtt---acaatcataacttccactttcttgtatgtt 23461893  T
Q  639 gtgaacatgcca 650  Q
    || | |||||||    
T  23461894 gtaaccatgcca 23461905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 539 - 655
Target Start/End: Original strand, 23438407 - 23438523
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 638  Q
    ||||||||||  |||| |||||||||| ||| ||| || ||||| |||  |||||||||||||||||| ||| ||||| | || || | |||||||||||    
T  23438407 ttatcccctcctttgaccaccacaattcttcattgggatcttgatgtatgaattgaaatgataagttgtaaatatcattacttccattttcttgtctgtt 23438506  T
Q  639 gtgaacatgccagcata 655  Q
    || | ||||||||||||    
T  23438507 gtaaccatgccagcata 23438523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 25045413 - 25045484
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaa 93  Q
    |||||||||||| ||| |||||||||||| |||||||||||||  ||| | ||||||||||| ||||||||||    
T  25045413 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttcca-ttcctcccaa 25045484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 32278405 - 32278488
Alignment:
Q  27 aatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatg 112  Q
    |||||| ||| |||||||||||| |||||||||||||  ||| | ||||||||||| |||||||||| ||| |||||||| |||||    
T  32278405 aatggaatgtgatggaactcattccatccaataccactcattcatccaattttcca-ttcctcccaaattg-gggtgtatccaatg 32278488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 27011216 - 27011264
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    ||||| |||||||||||||||| ||||||| |||| |||||||||||||    
T  27011216 ggaatggaatggaatggagtgtgatggaacccattccatccaataccac 27011264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 541 - 609
Target Start/End: Original strand, 23433899 - 23433967
Alignment:
Q  541 atcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaa 609  Q
    |||||||||||||| |||||||||| ||| ||| || ||||| | |  ||||||||||||| |||||||    
T  23433899 atcccctctgttgaccaccacaattcttcattgagatcttgatgcatgaattgaaatgataggttgcaa 23433967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 44212 - 44132
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttg 97  Q
    |||| |||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||| |||| |||||||||    
T  44212 gaatggaatggaatggagtgtgatggaacccattccatccaataccacccatttaaccaattttcca-ttccccccaatttg 44132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 77933 - 77853
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttg 97  Q
    |||| |||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||| |||| |||||||||    
T  77933 gaatggaatggaatggagtgtgatggaacccattccatccaataccacccatttaaccaattttcca-ttccccccaatttg 77853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 539 - 655
Target Start/End: Original strand, 9969 - 10082
Alignment:
Q  539 ttatcccctctgttgaacaccacaattgttccttgtgaccttgaagtagaaattgaaatgataagttgcaaaaatcataagtttcactatcttgtctgtt 638  Q
    |||||||||||||||| |||||||||| ||| ||| ||||||||||||  |||| ||||||||||||   | |||||||| || || | |||||||| ||    
T  9969 ttatcccctctgttgaccaccacaattcttcattgggaccttgaagtatgaatttaaatgataagtt---acaatcataacttccattttcttgtctatt 10065  T
Q  639 gtgaacatgccagcata 655  Q
    || | ||||||||||||    
T  10066 gtaaccatgccagcata 10082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 48084718 - 48084798
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttg 97  Q
    |||| |||||||||||||| | |||||||||||| |||||||||||||  |||||||||||||| || |||| |||||||||    
T  48084718 gaattgaatggaatggagtcttatggaactcatttcatccaataccactcatttaaccaatttttca-ttccccccaatttg 48084798  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 46944082 - 46944176
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatg 112  Q
    |||| |||||||||||||||| |||||||||||| |||||||||||||  ||||   |||||||||| |||| ||||||||| |||||||| |||||    
T  46944082 gaatggaatggaatggagtgtgatggaactcattccatccaataccactcattttgtcaattttcca-ttccacccaatttg-gggtgtatccaatg 46944176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 50859210 - 50859297
Alignment:
Q  23 atggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatg 112  Q
    |||||||||||||| |||||| ||||| |||||||||||||| ||||| |||| ||  || |||||||||||||| |||||||| |||||    
T  50859210 atggaatggagtgtgatggaattcattccatccaataccacccatttagccaaattgtca-ttcctcccaatttg-gggtgtatccaatg 50859297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 35033905 - 35033834
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaa 93  Q
    |||||||||||| ||| |||||||||||| |||||||||||||  ||| | ||||||||||| ||||||||||    
T  35033905 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttcca-ttcctcccaa 35033834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 3121264 - 3121323
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaa 75  Q
    |||| |||||||||||||||| |||||||||||| |||||||||||| | ||| ||||||    
T  3121264 gaatggaatggaatggagtgtgatggaactcattccatccaataccatccattaaaccaa 3121323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 31227734 - 31227797
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaatttt 79  Q
    |||| |||||||||| ||||| |||||| ||||| |||||||||||||  ||||||||||||||    
T  31227734 gaatggaatggaatgaagtgtgatggaaatcattccatccaataccactcatttaaccaatttt 31227797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 22405077 - 22405118
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaatacca 62  Q
    |||||||||||||||| |||||||||||| ||||||||||||    
T  22405077 gaatggaatggagtgtgatggaactcattccatccaatacca 22405118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 112
Target Start/End: Original strand, 35292080 - 35292175
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatg 112  Q
    ||||| |||||||||||||||| ||| ||||||||  ||||||||||||| ||| | |||| ||| || ||||| |||||||| |||||||| |||||    
T  35292080 ggaatggaatggaatggagtgtgatgtaactcattcaatccaataccacccattaagccaaattttcatttcct-ccaatttg-gggtgtatccaatg 35292175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 4292728 - 4292686
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    ||||||||||| |||| |||||||||||| |||||||||||||    
T  4292728 gaatggaatggtgtgtgatggaactcattccatccaataccac 4292686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 7444770 - 7444706
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttc 80  Q
    |||| |||||||||||||||| ||||||| |||| |||||||||||||  |||||||||||||||    
T  7444770 gaatggaatggaatggagtgtgatggaacccattccatccaataccactcatttaaccaattttc 7444706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 44246372 - 44246414
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  44246372 gaatggaatggagtgtgatggaactcattccatccaataccac 44246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 28219059 - 28219101
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  28219059 gaatggaatggagtgtgatggaacccattccatccaataccac 28219101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 10354290 - 10354339
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaataccacc 64  Q
    ||||| |||||||||||||||  ||| |||||||| ||||||||||||||    
T  10354290 ggaatggaatggaatggagtgcgatgaaactcattccatccaataccacc 10354339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 30084941 - 30085030
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatg 112  Q
    |||||||||||| ||| |||||||||||| |||||||||||||  ||| | ||||||||||| |||||||||| ||| |||||||| |||||    
T  30084941 gaatggaatggaatgtgatggaactcattccatccaataccactcattcatccaattttcca-ttcctcccaaattg-gggtgtatccaatg 30085030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 11617270 - 11617318
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccacc 64  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  11617270 gaatggaatggaatggagtgtgatggaactcattccatccaataccacc 11617318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 4943568 - 4943610
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  4943568 gaatggaatggagtgtgatggaacccattccatccaataccac 4943610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 9159479 - 9159536
Alignment:
Q  25 ggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttcca 82  Q
    |||||||| ||| ||||||| |||| |||||||||||||| ||||| ||||| |||||    
T  9159479 ggaatggaatgtgatggaacccattccatccaataccacccatttatccaatcttcca 9159536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 48046433 - 48046482
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaataccacc 64  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  48046433 ggaatggaatggaatggagtgtgatggaactcattccatccaataccacc 48046482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 15581607 - 15581696
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatg 112  Q
    |||||||||||||||| ||||||| |||| |||||||||||| | |||   ||||||||||| |||| ||||||||| |||||||| |||||    
T  15581607 gaatggaatggagtgtgatggaacccattccatccaataccatccattctcccaattttcca-ttccccccaatttg-gggtgtatccaatg 15581696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 16302801 - 16302758
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaat 58  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||    
T  16302801 ggaatggaatggaatggagtgtgatggaactcattccatccaat 16302758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 49764933 - 49764980
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||| |||||||||||| | |||||||||||| |||||||||||||    
T  49764933 gaataggatggaatggagtatgatggaactcatttcatccaataccac 49764980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 115
Target Start/End: Original strand, 41404109 - 41404201
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatgaaa 115  Q
    |||||||||||| ||| ||||||| |||| ||||  |||||||  ||| | ||||||||||| |||| ||||||||| |||||||| ||||||||    
T  41404109 gaatggaatggaatgtgatggaacccattccatcatataccactcattcatccaattttcca-ttccccccaatttg-gggtgtatccaatgaaa 41404201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 42365918 - 42365964
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaatacca 62  Q
    |||| |||||||||||||||| ||||||| |||| ||||||||||||    
T  42365918 gaatggaatggaatggagtgtgatggaacccattccatccaatacca 42365964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 42934260 - 42934302
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  42934260 gaatggaatggagtgtgatggaacccattccatccaataccac 42934302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 50678229 - 50678181
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    ||||| |||||||||||||||| ||||||| ||||  ||||||||||||    
T  50678229 ggaatggaatggaatggagtgtgatggaacccattctatccaataccac 50678181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 19625458 - 19625536
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgg 100  Q
    |||||||||||| ||| |||||||| ||| |||||||||||||  ||| | ||||||||||| |||||||||| ||||||    
T  19625458 gaatggaatggaatgtgatggaactaattccatccaataccactcattcatccaattttcca-ttcctcccaaattgtgg 19625536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 93
Target Start/End: Original strand, 12633459 - 12633539
Alignment:
Q  15 ggaatagaatggaatggagtgtaatggaactcattgcat---ccaataccacctatttaaccaattttccagttcctcccaa 93  Q
    ||||| ||||||| |||||||| |||||||||||| |||   ||||||||||  ||||| ||||||||||| ||||||||||    
T  12633459 ggaatggaatggagtggagtgtgatggaactcattccatcgaccaataccactcatttagccaattttcca-ttcctcccaa 12633539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 38679777 - 38679821
Alignment:
Q  16 gaatagaatggaatggagtgtaatggaactcattgcatccaatac 60  Q
    ||||||||||||||||||||| |||||||||||| ||| ||||||    
T  38679777 gaatagaatggaatggagtgtgatggaactcattccattcaatac 38679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 279 - 237
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  279 gaatggaatggagtgtgatggaacccattccatccaataccac 237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 12511 - 12469
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  12511 gaatggaatggagtgtgatggaacccattccatccaataccac 12469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 30226 - 30134
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccacctatttaaccaattttccagttcctcccaatttgtgggtgtatgcaatgaaa 115  Q
    |||||||||||| ||| ||||||| |||| ||||  |||||||  ||| | ||||||||||| |||| ||||||||| |||||||| ||||||||    
T  30226 gaatggaatggaatgtgatggaacccattccatcatataccactcattcatccaattttcca-ttccccccaatttg-gggtgtatccaatgaaa 30134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 38661 - 38619
Alignment:
Q  21 gaatggaatggagtgtaatggaactcattgcatccaataccac 63  Q
    |||||||||||||||| ||||||| |||| |||||||||||||    
T  38661 gaatggaatggagtgtgatggaacccattccatccaataccac 38619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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