View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_15 (Length: 641)

Name: NF8986_low_15
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_15
NF8986_low_15
[»] chr4 (6 HSPs)
chr4 (1-318)||(20326822-20327139)
chr4 (506-632)||(20343433-20343559)
chr4 (314-392)||(20343337-20343415)
chr4 (177-309)||(7451172-7451306)
chr4 (9-94)||(7451389-7451474)
chr4 (421-489)||(20495751-20495819)
[»] chr8 (2 HSPs)
chr8 (402-489)||(21808707-21808794)
chr8 (402-489)||(21815077-21815164)
[»] chr2 (3 HSPs)
chr2 (415-489)||(29602668-29602742)
chr2 (53-146)||(17659387-17659480)
chr2 (518-566)||(17659616-17659663)
[»] chr7 (7 HSPs)
chr7 (415-489)||(15931165-15931239)
chr7 (204-312)||(2934670-2934778)
chr7 (421-489)||(23531399-23531467)
chr7 (415-482)||(15833871-15833938)
chr7 (187-259)||(41572590-41572664)
chr7 (415-489)||(12537359-12537433)
chr7 (343-375)||(2934609-2934641)
[»] scaffold0071 (1 HSPs)
scaffold0071 (415-475)||(43254-43314)
[»] chr3 (1 HSPs)
chr3 (415-475)||(15418924-15418984)
[»] chr1 (1 HSPs)
chr1 (415-489)||(554301-554375)
[»] scaffold0443 (1 HSPs)
scaffold0443 (450-489)||(5538-5577)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-169; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 20326822 - 20327139
Alignment:
Q  1 taagttttggctctagcctgattgataggaattttagtcggataatcggagaaatgttttaggacaactcaccccgagcattccgtaaaatcaattcaga 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  20326822 taagtttcggctctagcctgattgataggaattttagtcggataatcggagaaatgtttcagaacaactcaccccgagcattccgtaaaatcaattcaga 20326921  T
Q  101 taatatgtttgctgcatactaactttaataaataatttaatatgataattatgacaaaacaattaaacttggatatattatatatagttagtgatcctag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20326922 taatatgtttgctgcatactaactttaataaataatttaatatgataattatgacaaaacaattaaacttggatatattatatatagttagtgatcctag 20327021  T
Q  201 tttccccatatcactttcaccctaggatgggtggaagtcactgagaccttatgtctcattcttatcctgttatttcttttcagattcgcaggtttctcgc 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20327022 tttccccatatcactttcaccctaggataggtggaagtcactgagaccttatgtctcattcttatcctgttatttcttttcagattcgcaggtttctcgc 20327121  T
Q  301 gagaagggtaagcataaa 318  Q
    ||||||||||||||||||    
T  20327122 gagaagggtaagcataaa 20327139  T

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Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 506 - 632
Target Start/End: Original strand, 20343433 - 20343559
Alignment:
Q  506 tgtactcgttagtcagtgcatgtttacttcagacaggattatgtaatttgtactcatcagcttgtactttgctattttattcggttaatattaattttaa 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20343433 tgtactcgttagtcagtgcatgtttacttcagacaggattatgtaatttgtactcatcagcttgtactttgctattttattcggttaatattaattttaa 20343532  T
Q  606 tatttttgtacgtctactgatgtccat 632  Q
    |||||||||||||||||||||||||||    
T  20343533 tatttttgtacgtctactgatgtccat 20343559  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 314 - 392
Target Start/End: Original strand, 20343337 - 20343415
Alignment:
Q  314 ataaagaagttgcatgacgctcgaggtgtattgtctgatattagtattatgttgatagtgtcgtgtagtatgtaatagg 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20343337 ataaagaagttgcatgacgctcgaggtgtattgtctgatattagtattatgttgatagtgtcgtgtagtatgtactagg 20343415  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 177 - 309
Target Start/End: Complemental strand, 7451306 - 7451172
Alignment:
Q  177 attatatatagttagtgatcctagtttc-cccatatcactttcaccctaggatgggtggaagtcactgagaccttatgtctcattcttatcc-tgttatt 274  Q
    |||||| |||||||| |||||||||||  ||| ||||| | |||||||||||| ||||||| | |||||||||||||||||||  |  |||| | |||||    
T  7451306 attatagatagttagcgatcctagtttgtcccgtatcattatcaccctaggataggtggaacttactgagaccttatgtctcaccccaatcctttttatt 7451207  T
Q  275 tcttttcagattcgcaggtttctcgcgagaagggt 309  Q
    ||||||||||| || ||||| |||| |||||||||    
T  7451206 tcttttcagatacgtaggttgctcgtgagaagggt 7451172  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 7451474 - 7451389
Alignment:
Q  9 ggctctagcctgattgataggaattttagtcggataatcggagaaatgttttaggacaactcaccccgagcattccgtaaaatcaa 94  Q
    ||||||||||||||||||||| ||||||| ||||||    ||| ||||||||| ||| |||||||||   |||||| |||||||||    
T  7451474 ggctctagcctgattgataggtattttagccggatagaaagaggaatgttttaagactactcaccccagccattccataaaatcaa 7451389  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 421 - 489
Target Start/End: Complemental strand, 20495819 - 20495751
Alignment:
Q  421 atgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    ||||||||| | || || ||||| |||||||||||||| ||||| ||||||| ||| || |||||||||    
T  20495819 atgattttttattcaagcacttctttgaggattctttcggggcgagtattcagaggagtgaagtgctcg 20495751  T

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Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 21808794 - 21808707
Alignment:
Q  402 acttaagggtgccggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    |||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21808794 acttaatggtgctggcggaatgattttcgattcgagaacttccttgaggattctttcggggcgcgtattcaaaggggtaaagtgctcg 21808707  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 402 - 489
Target Start/End: Complemental strand, 21815164 - 21815077
Alignment:
Q  402 acttaagggtgccggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    |||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21815164 acttaatggtgctggcggaatgattttcgattcgagaacttccttgaggattctttcggggcgcgtattcaaaggggtaaagtgctcg 21815077  T

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Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 29602668 - 29602742
Alignment:
Q  415 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||    
T  29602668 ggcggaatgatttttgactcgagaacttctttgaggattctttcggggcgcgtgttcaaaggggtaaagtgctcg 29602742  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 17659387 - 17659480
Alignment:
Q  53 aatgttttaggacaactcaccccgagcattccgtaaaatcaattcagataatatgtttgctgcatactaactttaataaataatttaatatgat 146  Q
    |||||||  |||| |||||||||| | |||||||||||||||   ||||||  |||||| | || ||||||||| |||||||||| ||||||||    
T  17659387 aatgtttcgggactactcaccccggggattccgtaaaatcaacctagataagttgtttgttccacactaacttttataaataattgaatatgat 17659480  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 566
Target Start/End: Original strand, 17659616 - 17659663
Alignment:
Q  518 tcagtgcatgtttacttcagacaggattatgtaatttgtactcatcagc 566  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||||||    
T  17659616 tcagtgcatgatta-ttcagacagcattatgtactttgtactcatcagc 17659663  T

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Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 15931165 - 15931239
Alignment:
Q  415 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    ||||| |||||||| || ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||||    
T  15931165 ggcgggatgattttcgattcgagtacttccttaagtattctttcggggcgcgtattcaaaggggtaaagtgctcg 15931239  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 2934778 - 2934670
Alignment:
Q  204 ccccatatcactttcaccctaggatgggtggaagtcactgagaccttatgtctcattcttatcctgttatttcttttcagattcgcaggtttctcgcgag 303  Q
    |||||||||||| ||||| ||||||  |||||| |||||||||| ||||||||| | |  ||||  || ||||||||||||| |||| ||| |||||| |    
T  2934778 ccccatatcactatcaccttaggataagtggaactcactgagacattatgtctcgtcccaatccctttctttcttttcagatacgcatgttactcgcggg 2934679  T
Q  304 aagggtaag 312  Q
    |||||||||    
T  2934678 aagggtaag 2934670  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 421 - 489
Target Start/End: Original strand, 23531399 - 23531467
Alignment:
Q  421 atgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    |||||||| || ||||||||||| |||||||| ||||| || || ||||||||||| || |||||||||    
T  23531399 atgattttcgattcgagaacttctttgaggatcctttcgggacgagtattcaaaggagtgaagtgctcg 23531467  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 482
Target Start/End: Original strand, 15833871 - 15833938
Alignment:
Q  415 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaa 482  Q
    ||||| |||||||| ||||| | |||||||||||||||||| |  ||||| ||||| |||||||||||    
T  15833871 ggcgggatgattttggactcaaaaacttccttgaggattctcttagggcgagtatttaaaggggtaaa 15833938  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 41572590 - 41572664
Alignment:
Q  187 gttagtgatcctagtttcccc--atatcactttcaccctaggatgggtggaagtcactgagaccttatgtctcat 259  Q
    |||||| ||| ||||||||||  | |||||| |||||| ||||| ||||||| ||||||| ||||||||||||||    
T  41572590 gttagttatcatagtttcccccaagatcactatcacccaaggataggtggaactcactgataccttatgtctcat 41572664  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 12537359 - 12537433
Alignment:
Q  415 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    ||||| |||||||| ||||| | |||||||||||||||| | || ||| | ||||| |||||||||||| |||||    
T  12537359 ggcgggatgattttggactcaaaaacttccttgaggattttctcagggtgagtatttaaaggggtaaagagctcg 12537433  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 2934641 - 2934609
Alignment:
Q  343 attgtctgatattagtattatgttgatagtgtc 375  Q
    ||||||||||||||||||||||||| |||||||    
T  2934641 attgtctgatattagtattatgttgctagtgtc 2934609  T

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Target: scaffold0071 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 475
Target Start/End: Original strand, 43254 - 43314
Alignment:
Q  415 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaag 475  Q
    ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  43254 ggcgggatgattttcgattcgagtacttccttgaggattctttcagggcgcgtattcaaag 43314  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 415 - 475
Target Start/End: Complemental strand, 15418984 - 15418924
Alignment:
Q  415 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaag 475  Q
    ||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||    
T  15418984 ggcgggatgattttcgattcgagtacttccttgaggattctttcagggcgcgtattcaaag 15418924  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 489
Target Start/End: Original strand, 554301 - 554375
Alignment:
Q  415 ggcggaatgatttttgactcgagaacttccttgaggattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    ||||| |||||||| ||||||| |||||||||||||||| | || ||||| || || ||||||||||||||||||    
T  554301 ggcgggatgattttggactcgaaaacttccttgaggattttctcagggcgagtgtttaaaggggtaaagtgctcg 554375  T

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Target: scaffold0443 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 489
Target Start/End: Original strand, 5538 - 5577
Alignment:
Q  450 gattctttctgggcgcgtattcaaaggggtaaagtgctcg 489  Q
    ||||||||| |||||||| |||||||||||||||||||||    
T  5538 gattctttcagggcgcgttttcaaaggggtaaagtgctcg 5577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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