View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_156 (Length: 203)

Name: NF8986_low_156
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_156
NF8986_low_156
[»] chr3 (4 HSPs)
chr3 (1-179)||(7038370-7038548)
chr3 (139-179)||(7973631-7973671)
chr3 (139-179)||(10499070-10499110)
chr3 (139-179)||(51903839-51903879)
[»] chr5 (1 HSPs)
chr5 (143-179)||(9187494-9187530)
[»] chr8 (1 HSPs)
chr8 (139-179)||(11099842-11099882)
[»] chr6 (1 HSPs)
chr6 (139-179)||(12633084-12633124)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 7038548 - 7038370
Alignment:
Q  1 agacctttaatgacatatgtcaaaacaatacaggaggcaaagttaaagaagttaaggaagatttgaatagactgaaaataaaaggcgtatcattggggct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7038548 agacctttaatgacatatgtcaaaacaatacaggaggcaaagttaaagaagttaaggaagatttgaatagaccgaaaataaaaggcgtatcattggggct 7038449  T
Q  101 ctcagatgcggaggttttgatcaagagagatcttctcatctctccgatgttaatttgagtggactaatttagcttcttc 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7038448 ctcagatgcggaggttttgatcaagagagatcttctcatctctccgatgttaatttgagtggactaatttagcttcttc 7038370  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 7973631 - 7973671
Alignment:
Q  139 tctctccgatgttaatttgagtggactaatttagcttcttc 179  Q
    |||||| ||||| |||||| |||||||||||||||||||||    
T  7973631 tctctctgatgtcaatttgggtggactaatttagcttcttc 7973671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 10499110 - 10499070
Alignment:
Q  139 tctctccgatgttaatttgagtggactaatttagcttcttc 179  Q
    |||||||||||| |||||| |||| ||||||||||||||||    
T  10499110 tctctccgatgtcaatttgggtgggctaatttagcttcttc 10499070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 51903879 - 51903839
Alignment:
Q  139 tctctccgatgttaatttgagtggactaatttagcttcttc 179  Q
    |||||||| ||| ||||||||||| ||||||||||||||||    
T  51903879 tctctccggtgtcaatttgagtgggctaatttagcttcttc 51903839  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 9187494 - 9187530
Alignment:
Q  143 tccgatgttaatttgagtggactaatttagcttcttc 179  Q
    |||||||| ||||||||||||||||||||||||||||    
T  9187494 tccgatgtcaatttgagtggactaatttagcttcttc 9187530  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 11099842 - 11099882
Alignment:
Q  139 tctctccgatgttaatttgagtggactaatttagcttcttc 179  Q
    |||||||||||| ||||||| ||||||||||||| ||||||    
T  11099842 tctctccgatgtcaatttgaatggactaatttagtttcttc 11099882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 12633084 - 12633124
Alignment:
Q  139 tctctccgatgttaatttgagtggactaatttagcttcttc 179  Q
    ||||||| |||| ||||| ||||||||||||||||||||||    
T  12633084 tctctccaatgtcaatttaagtggactaatttagcttcttc 12633124  T

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