View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_17 (Length: 634)
Name: NF8986_low_17
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 5362029 - 5361575
Alignment:
| Q |
19 |
acatccaaacattccacaatgagagccaacgtaatcagggtaaagagttacttttgcaataacatttaacatacatttcacttcactttattattaataa |
118 |
Q |
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| T |
5362029 |
acatccaaacattccacaatgagagccaacgtaatcagggtaaagagttacttttgcaataacatttaacatacatttcacttcactttattattaataa |
5361930 |
T |
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| Q |
119 |
tcctctcttcttatcctaatcatgtgacaatatttaagtactaaatttatgtagcattgttatattcaaagcagcatagtccaaaacaacaacattcacc |
218 |
Q |
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| T |
5361929 |
tcctctcttcttatcctaatcatgtgacaatatttaagtactaaatttatgtagcattgttatattcaaagcagcatagtccaaaacaacaacattcacc |
5361830 |
T |
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| Q |
219 |
ccaaaaacaaggtacaatgaatgttagttaaaagcataaaacaaaacataaatttctaatacataacaatgttgataaattgataccatttcgcacgtgc |
318 |
Q |
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| T |
5361829 |
ccaaaaacaaggtacaatgaatgttagttaaaagcataaaacaaaacataaatttctaatatataacaatgttgataaattgataccatttcgcacgtgc |
5361730 |
T |
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| Q |
319 |
ggcgagtttaagcggcattggttgagattcacaacaaggtccttccatagcaaccttatgaagtccatacagctccatctccaaatcaccatcacaatta |
418 |
Q |
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| T |
5361729 |
ggcgagtttaagcggcattggttgagattcacaacaaggtccttccatagcaaccttatgaagtccatacaactccatctccaaatcaccatcacaatta |
5361630 |
T |
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| Q |
419 |
ccaatataccctttctcaccaacatattctgtagccgtcataaacatcttctcca |
473 |
Q |
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| T |
5361629 |
ccaatataccctttctcaccaacatattctgtagccgtcataaacatcttctcca |
5361575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 539 - 618
Target Start/End: Complemental strand, 5361509 - 5361430
Alignment:
| Q |
539 |
gttaagctttcttccatgatttcttccacacaatcctcgttcctctgttccacagaatcatcaccttttgtaacagtttc |
618 |
Q |
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| T |
5361509 |
gttaagctttcttccatgatttcttccacacactcctcgttcctctgttgcacagaatcatcaccttttgtaacagtttc |
5361430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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