View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_18 (Length: 633)

Name: NF8986_low_18
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_18
NF8986_low_18
[»] chr3 (8 HSPs)
chr3 (20-539)||(33593288-33593807)
chr3 (20-539)||(33600419-33600938)
chr3 (368-601)||(33585975-33586192)
chr3 (94-179)||(33586260-33586346)
chr3 (560-617)||(33593233-33593290)
chr3 (560-617)||(33600364-33600421)
chr3 (20-78)||(33586607-33586665)
chr3 (246-290)||(33586214-33586258)
[»] chr1 (1 HSPs)
chr1 (95-132)||(2632592-2632629)
[»] chr5 (1 HSPs)
chr5 (100-132)||(28429466-28429498)
[»] chr2 (1 HSPs)
chr2 (100-132)||(37533691-37533723)


Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Complemental strand, 33593807 - 33593288
Alignment:
Q  20 aaattcacatgcaaatacttattaaccattgtatcatgaaggttctctaaaatattttaaattctcctttttcattaagaaatgttatttctagaaataa 119  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  33593807 aaattcacatgcaaatacttattaaccattgtattataaaggttctctaaaatattttaaattctcctttttcattaagaaatgttatttctatgaataa 33593708  T
Q  120 atttagtaaactttacacgttacgataagctaatagattgatattgttaaaatgttaggcacgagtaagcctttgctgtccaatccaatctgatcttctt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  33593707 atttagtaaactttacacgttacgataagctaatagattgatattgctaaaatgttaggcacgagtaagcctttgatgtccaatccaatctgatattctt 33593608  T
Q  220 aacggaatatcaccaattcatcaccaaactatttcaacaaaaacatcaaagattggtggttagaaaagaaaaagaatcgtggcactttgtggtcaataca 319  Q
    |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33593607 aacgtaatatcaccaattcatcaccaaaccatttcaacaaaatcatcaaagattggtggttagaaaagaaaaagaatcgtggcactttgtggtcaataca 33593508  T
Q  320 agtatatactttgaagcgttgactatgcggtaggacnnnnnnnnnnnngtgtgctcactctgtcacttatttcacataattcgtgtgcattaattagtca 419  Q
    | ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33593507 actatatactttgaagcgttgactatgcggtaggacttttttctttttgtgtgctcactctgtcacttatttcacataattggtgtgcattaattagtca 33593408  T
Q  420 ggcccatcatcccccactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaaaacatgaaagggaaatgatttgga 519  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33593407 ggcccatcatcccctactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaaaacatgaaagggaaatgatttgga 33593308  T
Q  520 gtttccctcttgcttgtttt 539  Q
    |||||||||||| |||||||    
T  33593307 gtttccctcttgtttgtttt 33593288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Complemental strand, 33600938 - 33600419
Alignment:
Q  20 aaattcacatgcaaatacttattaaccattgtatcatgaaggttctctaaaatattttaaattctcctttttcattaagaaatgttatttctagaaataa 119  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  33600938 aaattcacatgcaaatacttattaaccattgtattataaaggttctctaaaatattttaaattctcctttttcattaagaaatgttatttctatgaataa 33600839  T
Q  120 atttagtaaactttacacgttacgataagctaatagattgatattgttaaaatgttaggcacgagtaagcctttgctgtccaatccaatctgatcttctt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  33600838 atttagtaaactttacacgttacgataagctaatagattgatattgctaaaatgttaggcacgagtaagcctttgatgtccaatccaatctgatattctt 33600739  T
Q  220 aacggaatatcaccaattcatcaccaaactatttcaacaaaaacatcaaagattggtggttagaaaagaaaaagaatcgtggcactttgtggtcaataca 319  Q
    |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33600738 aacgtaatatcaccaattcatcaccaaaccatttcaacaaaatcatcaaagattggtggttagaaaagaaaaagaatcgtggcactttgtggtcaataca 33600639  T
Q  320 agtatatactttgaagcgttgactatgcggtaggacnnnnnnnnnnnngtgtgctcactctgtcacttatttcacataattcgtgtgcattaattagtca 419  Q
    | ||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33600638 actatatactttgaagcgttgactatgcggtaggacttttttctttttgtgtgctcactctgtcacttatttcacataattggtgtgcattaattagtca 33600539  T
Q  420 ggcccatcatcccccactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaaaacatgaaagggaaatgatttgga 519  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33600538 ggcccatcatcccctactccccaacatttatgagaaaaaccagttgtgcttgactttatttttcgttgttttgcaaaacatgaaagggaaatgatttgga 33600439  T
Q  520 gtttccctcttgcttgtttt 539  Q
    |||||||||||| |||||||    
T  33600438 gtttccctcttgtttgtttt 33600419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 368 - 601
Target Start/End: Complemental strand, 33586192 - 33585975
Alignment:
Q  368 gtgtgctcactctgtcacttat-ttcacataattcgtgtgcattaattagtcaggcccatcatcccccactccccaacatttatgagaaaaaccagttgt 466  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||||||  |||||||||||||| |||||            
T  33586192 gtgtgctcactctgtcactcatattcacataattggtgtgcattaattagtcaagcccatcatcccccacctcccaacatttatgaaaaaaa-------- 33586101  T
Q  467 gcttgactttatttttcgttgttttgcaaaacatgaaagggaaatgatttggagtttccctcttgcttgttttcgtgtctgattggtttggagtttgcaa 566  Q
         |  |||||||||||||||||||||||||||| ||||||||||     |   ||||||||| ||||||| ||| ||| ||| |||||| |||||||    
T  33586100 ----aaaattatttttcgttgttttgcaaaacatgacagggaaatga-----aagctccctcttgtttgttttagtgcctgtttgatttggaatttgcaa 33586010  T
Q  567 ccatagacgcaggtctgcgagatttccaaagcaaa 601  Q
    ||| | | ||| ||||||  |||||||||||||||    
T  33586009 ccacaaatgcatgtctgcaggatttccaaagcaaa 33585975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 94 - 179
Target Start/End: Complemental strand, 33586346 - 33586260
Alignment:
Q  94 ttaagaaatgttatttctagaaataaatttagtaaactttacacgtta-cgataagctaatagattgatattgttaaaatgttaggc 179  Q
    ||||| |||||| |||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  33586346 ttaaggaatgttgtttctagaaataaatttaataaactttacacgttaccgttaagctaatagattgatattgttaaaatgttaggc 33586260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 560 - 617
Target Start/End: Complemental strand, 33593290 - 33593233
Alignment:
Q  560 tttgcaaccatagacgcaggtctgcgagatttccaaagcaaatttgccttaattttta 617  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  33593290 tttgcaaccacaaacgcaggtctgcgagatttccaaagcaaatttgacttaattttta 33593233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 560 - 617
Target Start/End: Complemental strand, 33600421 - 33600364
Alignment:
Q  560 tttgcaaccatagacgcaggtctgcgagatttccaaagcaaatttgccttaattttta 617  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||    
T  33600421 tttgcaaccacaaacgcaggtctgcgagatttccaaagcaaatttgacttaattttta 33600364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 33586665 - 33586607
Alignment:
Q  20 aaattcacatgcaaatacttattaaccattgtatcatgaaggttctctaaaatatttta 78  Q
    ||||||||||| ||||||||||||| |||  ||| || |||||||||||||||||||||    
T  33586665 aaattcacatgtaaatacttattaatcatcatattataaaggttctctaaaatatttta 33586607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 33586258 - 33586214
Alignment:
Q  246 aactatttcaacaaaaacatcaaagattggtggttagaaaagaaa 290  Q
    ||||||| ||||||||||||||||||||| | |||||||||||||    
T  33586258 aactattacaacaaaaacatcaaagattgttagttagaaaagaaa 33586214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 2632629 - 2632592
Alignment:
Q  95 taagaaatgttatttctagaaataaatttagtaaactt 132  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  2632629 taaggaatgttattcctagaaataaatttagtaaactt 2632592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 28429498 - 28429466
Alignment:
Q  100 aatgttatttctagaaataaatttagtaaactt 132  Q
    |||||||||||||||||||||||| ||||||||    
T  28429498 aatgttatttctagaaataaatttggtaaactt 28429466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 37533723 - 37533691
Alignment:
Q  100 aatgttatttctagaaataaatttagtaaactt 132  Q
    ||||||||| |||||||||||||||||||||||    
T  37533723 aatgttattcctagaaataaatttagtaaactt 37533691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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