View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_21 (Length: 609)

Name: NF8986_low_21
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_21
NF8986_low_21
[»] chr4 (7 HSPs)
chr4 (353-540)||(52930359-52930546)
chr4 (165-311)||(52930215-52930362)
chr4 (40-98)||(41824007-41824066)
chr4 (40-96)||(31910317-31910374)
chr4 (56-96)||(50052346-50052386)
chr4 (60-96)||(29240032-29240068)
chr4 (59-96)||(3481789-3481826)
[»] chr1 (4 HSPs)
chr1 (40-98)||(32813372-32813431)
chr1 (40-99)||(37926353-37926413)
chr1 (56-97)||(6261012-6261053)
chr1 (40-96)||(45044478-45044535)
[»] chr7 (9 HSPs)
chr7 (40-96)||(46374742-46374799)
chr7 (40-98)||(46033717-46033776)
chr7 (40-96)||(35523001-35523058)
chr7 (39-97)||(26296768-26296827)
chr7 (56-97)||(12311046-12311087)
chr7 (40-96)||(21234526-21234583)
chr7 (40-95)||(16374743-16374799)
chr7 (40-96)||(31736002-31736059)
chr7 (56-96)||(41423824-41423864)
[»] chr6 (5 HSPs)
chr6 (40-98)||(31976373-31976432)
chr6 (59-97)||(22421996-22422034)
chr6 (40-96)||(31110679-31110736)
chr6 (61-96)||(31952948-31952983)
chr6 (59-92)||(29857972-29858005)
[»] chr3 (16 HSPs)
chr3 (40-96)||(20764833-20764890)
chr3 (46-96)||(14623757-14623808)
chr3 (40-96)||(11347840-11347897)
chr3 (40-96)||(26141448-26141505)
chr3 (59-96)||(35536771-35536808)
chr3 (60-96)||(8076539-8076575)
chr3 (59-98)||(8956907-8956946)
chr3 (45-96)||(24699873-24699924)
chr3 (46-96)||(35965700-35965751)
chr3 (59-96)||(30801651-30801688)
chr3 (56-97)||(35093727-35093768)
chr3 (40-96)||(41189682-41189739)
chr3 (40-96)||(51419278-51419335)
chr3 (43-94)||(13897975-13898027)
chr3 (56-96)||(26754837-26754877)
chr3 (60-96)||(47532011-47532047)
[»] chr2 (12 HSPs)
chr2 (59-100)||(20700960-20701001)
chr2 (40-96)||(40613820-40613877)
chr2 (40-97)||(38273060-38273117)
chr2 (56-96)||(3440121-3440161)
chr2 (40-98)||(36168961-36169020)
chr2 (58-96)||(33436345-33436383)
chr2 (56-101)||(3738085-3738130)
chr2 (40-92)||(7465657-7465710)
chr2 (40-92)||(17473145-17473198)
chr2 (40-92)||(19930742-19930795)
chr2 (40-92)||(28863580-28863633)
chr2 (41-96)||(2533249-2533305)
[»] chr8 (7 HSPs)
chr8 (60-99)||(8841347-8841386)
chr8 (59-96)||(42354506-42354543)
chr8 (40-96)||(43414499-43414556)
chr8 (61-98)||(10621013-10621050)
chr8 (60-96)||(15258847-15258883)
chr8 (46-93)||(40423864-40423912)
chr8 (63-99)||(40467849-40467885)
[»] scaffold0316 (1 HSPs)
scaffold0316 (56-96)||(17245-17285)
[»] chr5 (3 HSPs)
chr5 (56-96)||(31009130-31009170)
chr5 (56-94)||(9603955-9603993)
chr5 (40-96)||(15409528-15409585)
[»] scaffold0237 (1 HSPs)
scaffold0237 (59-92)||(4174-4207)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 2e-94; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 353 - 540
Target Start/End: Original strand, 52930359 - 52930546
Alignment:
Q  353 tagagcatgttgatccaaaaacggatcaattattttcattttaattttcattattatattaataatatatgcggttgcggtatatgatgacagacaaatg 452  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52930359 tagagcatgttgatccaaaaacggatcaattattttcattttcattttcattattatattaataatatatgcggttgcggtatatgatgacagacaaatg 52930458  T
Q  453 acattttgcgacctaaaaaatgtcagaagtcatttccttattgttctctttctgtctgtgaagttaagaggcgctcgcgatcacagtt 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  52930459 acattttgcgacctaaaaaatgtcagaagtcatttccttattgttctctttctgtctgtaaagttaagaggcggtcgcgatcacagtt 52930546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 165 - 311
Target Start/End: Original strand, 52930215 - 52930362
Alignment:
Q  165 aagacaatctttattcgtgtttactagtt---gggtgtagttgtagtacgtacgtggctctatatattgccaatttcacacacgtttctgatgannnnnn 261  Q
    |||||||||||||||||||||||||| |    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  52930215 aagacaatctttattcgtgtttactattactagtatgtagttgtagtacgtacgtggctctatatattgccaatttcacacacgtttctgatga--tttt 52930312  T
Q  262 nnataatactagttgggggattacttgtaacaaaaattattgattttaga 311  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52930313 ttataatactagttgggggattacttgtaacaaaaattattgattttaga 52930362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 41824007 - 41824066
Alignment:
Q  40 taatgtatgaggtgta-aaaggtgtatgggaataaatggtgtctatgtaacattttccat 98  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  41824007 taatgcatgaggtgtacaaaggtgtatgagaataaatggtgtctatgtaacattttccat 41824066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 31910317 - 31910374
Alignment:
Q  40 taatgtatgaggtgtaaaag-gtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| | |||| ||| |||||||||||||||||||||||||||||||||||||    
T  31910317 taatgtatgggatgtacaagagtgtatgggaataaatggtgtctatgtaacattttcc 31910374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 50052386 - 50052346
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  50052386 aaaggtgtatgggaataaagggtgtctatgtaacattttcc 50052346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 29240032 - 29240068
Alignment:
Q  60 gtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||||||||| |||||||||||||||||||||    
T  29240032 gtgtatgggaataaagggtgtctatgtaacattttcc 29240068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 3481789 - 3481826
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  3481789 ggtgtatgagaataaagggtgtctatgtaacattttcc 3481826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 32813372 - 32813431
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttccat 98  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  32813372 taatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttccat 32813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 37926413 - 37926353
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttccatt 99  Q
    ||||||||| |||||| |||| |||||| ||||||||||||||||| ||| ||||||||||    
T  37926413 taatgtatggggtgtacaaggatgtatgtgaataaatggtgtctatataatattttccatt 37926353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 6261012 - 6261053
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcca 97  Q
    |||||||||||  |||||||||||| ||||||||||||||||    
T  6261012 aaaggtgtatgaaaataaatggtgtgtatgtaacattttcca 6261053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 45044535 - 45044478
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| |||||| ||||||||| |||||| ||||||||||||    
T  45044535 taatgtatggggtgtacaagggtgtatgagaataaatgatgtctacgtaacattttcc 45044478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 46374799 - 46374742
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||    
T  46374799 taatgtatggggtgtacaagggtgtatgggaataaatggtgtctatgtaacattttcc 46374742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 46033776 - 46033717
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttccat 98  Q
    ||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  46033776 taatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttccat 46033717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 35523001 - 35523058
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| |||||||||||||||||||| |||||||||||||||    
T  35523001 taatgtatggggtgtacaagggtgtatgggaataaatggtgtttatgtaacattttcc 35523058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 26296768 - 26296827
Alignment:
Q  39 ttaatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcca 97  Q
    ||||||||||||||||| |||| ||||||| |||| |||||||||| |||||||||||||    
T  26296768 ttaatgtatgaggtgtacaagggtgtatggaaatatatggtgtctacgtaacattttcca 26296827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 12311046 - 12311087
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcca 97  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  12311046 aaaggtgtatggaaataaagggtgtctatgtaacattttcca 12311087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 21234526 - 21234583
Alignment:
Q  40 taatgtatgaggtgtaaaa-ggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| || |||||||| ||||||| |||||||||||||||||||||    
T  21234526 taatgtatggggtgtacaatggtgtatgagaataaaaggtgtctatgtaacattttcc 21234583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 16374799 - 16374743
Alignment:
Q  40 taatgtatgaggtgta-aaaggtgtatgggaataaatggtgtctatgtaacattttc 95  Q
    |||||||||  ||||| ||||||||||| ||||||| ||||||||||||||||||||    
T  16374799 taatgtatggagtgtacaaaggtgtatgagaataaagggtgtctatgtaacattttc 16374743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 31736002 - 31736059
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| |||||||||||||| ||| ||||| |||||||||||    
T  31736002 taatgtatggggtgtacaagggtgtatgggaataaaaggtatctatctaacattttcc 31736059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 41423824 - 41423864
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    
T  41423824 aaaggtgtatgagaataaagggtgtttatgtaacattttcc 41423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 31976373 - 31976432
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttccat 98  Q
    ||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||||    
T  31976373 taatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttccat 31976432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 22422034 - 22421996
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacattttcca 97  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  22422034 ggtgtatgagaataaatggtgtctatgtaacattttcca 22421996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 31110736 - 31110679
Alignment:
Q  40 taatgtatgaggtgta-aaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||||||||||| |||||| | |||||||||||||||||||    
T  31110736 taatgtatggggtgtacaaaggtgtatggaaataaaggatgtctatgtaacattttcc 31110679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 31952983 - 31952948
Alignment:
Q  61 tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||| |||||||||||||||||||||||||||||    
T  31952983 tgtatgagaataaatggtgtctatgtaacattttcc 31952948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 29857972 - 29858005
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacatt 92  Q
    ||||||||||||||||||||||||||||| ||||    
T  29857972 ggtgtatgggaataaatggtgtctatgtatcatt 29858005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 20764890 - 20764833
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||    
T  20764890 taatgtatggggtgtacaagggtgtatgagaataaatggtgtctatgtaacattttcc 20764833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 14623808 - 14623757
Alignment:
Q  46 atgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  14623808 atgaggtgtagaaggatgtatgagaataaatggtgtctatgtaacattttcc 14623757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 11347897 - 11347840
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| |||||||||||||| |||||||||||| ||||||||    
T  11347897 taatgtatggggtgtataagggtgtatgggaataaagggtgtctatgtaccattttcc 11347840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 26141505 - 26141448
Alignment:
Q  40 taatgtatgaggtgtaaaag-gtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| ||| |||||||| |||||| |||||||||||||||||||||    
T  26141505 taatgtatggggtgtacaagagtgtatggaaataaagggtgtctatgtaacattttcc 26141448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 35536771 - 35536808
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  35536771 ggtgtatgagaataaatggtgtctatgtaacattttcc 35536808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 8076539 - 8076575
Alignment:
Q  60 gtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||| |||||||||||||||||||||||||||||    
T  8076539 gtgtatgagaataaatggtgtctatgtaacattttcc 8076575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Original strand, 8956907 - 8956946
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacattttccat 98  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  8956907 ggtgtatgagaataaatgctgtctatgtaacattttccat 8956946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 96
Target Start/End: Complemental strand, 24699924 - 24699873
Alignment:
Q  45 tatgaggtgtaaaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||||| ||| |||||| ||||||| | |||||||||||||||||||    
T  24699924 tatgaggtgtataagatgtatgagaataaaagatgtctatgtaacattttcc 24699873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 96
Target Start/End: Complemental strand, 35965751 - 35965700
Alignment:
Q  46 atgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||||| |||| |||||| ||||||| |||||||||||||||||||||    
T  35965751 atgaggtgtacaagggtgtatgagaataaaaggtgtctatgtaacattttcc 35965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 30801688 - 30801651
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||| ||||||| |||||||||||||||||||||    
T  30801688 ggtgtatgagaataaaaggtgtctatgtaacattttcc 30801651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 35093727 - 35093768
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcca 97  Q
    ||||||||||| ||||||||| |||||| |||||||||||||    
T  35093727 aaaggtgtatgagaataaatgatgtctaggtaacattttcca 35093768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 41189739 - 41189682
Alignment:
Q  40 taatgtatgaggtgtaaaag-gtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||||  ||||| ||| |||||||| |||||| |||||||||||||||||||||    
T  41189739 taatgtatggagtgtacaagagtgtatggaaataaagggtgtctatgtaacattttcc 41189682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 51419335 - 51419278
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| ||||||| |||||| ||||| |||||||||||||||    
T  51419335 taatgtatggggtgtacaagggtgtatggaaataaaaggtgtttatgtaacattttcc 51419278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 13898027 - 13897975
Alignment:
Q  43 tgtatgaggtgta-aaaggtgtatgggaataaatggtgtctatgtaacatttt 94  Q
    |||||| |||||| ||| ||||||| ||||||||||||||||| |||||||||    
T  13898027 tgtatggggtgtagaaaagtgtatgagaataaatggtgtctatctaacatttt 13897975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 26754837 - 26754877
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||||||| ||||||  ||||||||||||||||||||    
T  26754837 aaaggtgtatggaaataaagagtgtctatgtaacattttcc 26754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 47532011 - 47532047
Alignment:
Q  60 gtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  47532011 gtgtatgggaataaagggtgtttatgtaacattttcc 47532047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 20700960 - 20701001
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacattttccattc 100  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  20700960 ggtgtatgggaataaagggtgtctatgtaacattttccattc 20701001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 40613877 - 40613820
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| |||||||||||||| |||||||||||||||||||||    
T  40613877 taatgtatggggtgtacaagggtgtatgggaataaagggtgtctatgtaacattttcc 40613820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 97
Target Start/End: Complemental strand, 38273117 - 38273060
Alignment:
Q  40 taatgtatgaggtgtaaaaggtgtatgggaataaatggtgtctatgtaacattttcca 97  Q
    ||||||||| |||||| ||| |||||| ||||||||||||| ||||||| ||||||||    
T  38273117 taatgtatggggtgtacaagatgtatgagaataaatggtgtttatgtaatattttcca 38273060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 3440121 - 3440161
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  3440121 aaaggtgtatggaaataaagggtgtctatgtaacattttcc 3440161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 36168961 - 36169020
Alignment:
Q  40 taatgtatgaggtgtaaaag-gtgtatgggaataaatggtgtctatgtaacattttccat 98  Q
    ||||||||| |||||| ||| ||||||| ||||||| ||||| |||||||||||||||||    
T  36168961 taatgtatggggtgtacaagagtgtatgagaataaagggtgtttatgtaacattttccat 36169020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 33436345 - 33436383
Alignment:
Q  58 aggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  33436345 aggtgtatgagaataaaaggtgtctatgtaacattttcc 33436383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 3738085 - 3738130
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttccattca 101  Q
    |||||||||||  |||| | ||||||||||||||||||||||||||    
T  3738085 aaaggtgtatgaaaatatagggtgtctatgtaacattttccattca 3738130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 7465710 - 7465657
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacatt 92  Q
    ||||| |||||||||| |||| |||||||||||||| |||||||||||| ||||    
T  7465710 taatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 7465657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 17473145 - 17473198
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacatt 92  Q
    ||||| |||||||||| |||| |||||||||||||| |||||||||||| ||||    
T  17473145 taatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 17473198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Complemental strand, 19930795 - 19930742
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacatt 92  Q
    ||||| |||||||||| |||| |||||||||||||| |||||||||||| ||||    
T  19930795 taatgcatgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcatt 19930742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 28863580 - 28863633
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacatt 92  Q
    ||||| |||||||||| |||| |||||||||||||| |||||||||||| ||||    
T  28863580 taatgcatgaggtgtacaagggtgtatgggaataaagggtgtctatgtatcatt 28863633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 2533249 - 2533305
Alignment:
Q  41 aatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||| |||||| |||| |||||||||||||| ||||| ||| |||||||||||    
T  2533249 aatgtatggggtgtacaagggtgtatgggaataaagggtgtatatataacattttcc 2533305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 60 - 99
Target Start/End: Complemental strand, 8841386 - 8841347
Alignment:
Q  60 gtgtatgggaataaatggtgtctatgtaacattttccatt 99  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  8841386 gtgtatgagaataaatggtgtctatgtaacattttccatt 8841347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 42354543 - 42354506
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||| |||||||||||||||||||||||||||||    
T  42354543 ggtgtatgagaataaatggtgtctatgtaacattttcc 42354506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 43414556 - 43414499
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| ||||||| |||||| |||||||||||||||||||||    
T  43414556 taatgtatggggtgtacaagggtgtatggcaataaagggtgtctatgtaacattttcc 43414499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 10621050 - 10621013
Alignment:
Q  61 tgtatgggaataaatggtgtctatgtaacattttccat 98  Q
    |||||||||||||| | |||||||||||||||||||||    
T  10621050 tgtatgggaataaaagatgtctatgtaacattttccat 10621013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 15258883 - 15258847
Alignment:
Q  60 gtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||| |||||| |||||||||||||||||||||    
T  15258883 gtgtatggaaataaagggtgtctatgtaacattttcc 15258847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 40423912 - 40423864
Alignment:
Q  46 atgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattt 93  Q
    |||||||||| |||| |||||||||||||| |||||||||||| |||||    
T  40423912 atgaggtgtacaagggtgtatgggaataaaaggtgtctatgtatcattt 40423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 40467849 - 40467885
Alignment:
Q  63 tatgggaataaatggtgtctatgtaacattttccatt 99  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  40467849 tatggggataaaaggtgtctatgtaacattttccatt 40467885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 17245 - 17285
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  17245 aaaggtgtatggaaataaagggtgtctatgtaacattttcc 17285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 31009130 - 31009170
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  31009130 aaaggtgtatgagaataaagggtgtctatgtaacattttcc 31009170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 9603955 - 9603993
Alignment:
Q  56 aaaggtgtatgggaataaatggtgtctatgtaacatttt 94  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  9603955 aaaggtgtatgagaataaatggtgtctacgtaacatttt 9603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 15409585 - 15409528
Alignment:
Q  40 taatgtatgaggtgtaaaagg-tgtatgggaataaatggtgtctatgtaacattttcc 96  Q
    ||||||||| |||||| |||| |||||| ||||||| ||||| |||||||||||||||    
T  15409585 taatgtatggggtgtacaagggtgtatgcgaataaagggtgtttatgtaacattttcc 15409528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 92
Target Start/End: Original strand, 4174 - 4207
Alignment:
Q  59 ggtgtatgggaataaatggtgtctatgtaacatt 92  Q
    ||||||||||||||||||||||||||||| ||||    
T  4174 ggtgtatgggaataaatggtgtctatgtatcatt 4207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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