View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_22 (Length: 592)
Name: NF8986_low_22
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 578
Target Start/End: Original strand, 53866432 - 53866993
Alignment:
| Q |
19 |
tatttcactgtaggttaacttgaaacatctaacaaaactatttacaggttaaatatgtcaaagatccggtgccagaaactagaattg--aatctaatgag |
116 |
Q |
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| T |
53866432 |
tatttcactgtaggttaacttgaaacatctaacaaaactatttacaggttaaatatgtcaaagatccggtgccagaaactagaattgcgaatctaatgag |
53866531 |
T |
|
| Q |
117 |
atttttgcgagacagattcccagaaggtatgaatgaacgtggacttactttcacaggatttcaatctctccatgctgatttcatgaaaattttgtttcgt |
216 |
Q |
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| T |
53866532 |
atttttgcgagacagattcccggaaggtatgaatgaacgtggacttactttcacaggatttcaatctctccatgctgatttcatgaaaattttgtttcgt |
53866631 |
T |
|
| Q |
217 |
gagataccatggactatgcttaaaaggtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgt |
316 |
Q |
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| T |
53866632 |
gagataccatggactatgcttaaaaggtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgt |
53866731 |
T |
|
| Q |
317 |
ttcttttgatatgaaatgtggccttgtgtatattttgttctttatttctttattagaccagtttgagatcaannnnnnnacaacatgaaactttcaatgt |
416 |
Q |
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| T |
53866732 |
ttcttttgatatgaaatgtggccttgtgtatattttgttctttatttctttattagaccagtttgagatcaatttttttacaacatgaaactttcaatgt |
53866831 |
T |
|
| Q |
417 |
attctaatcaagatttgatttaacgtctacagagcgtcgagttgacaaatgaagctcttgatttcttgaagaaaatatttgttgcgtttgatattaattc |
516 |
Q |
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| T |
53866832 |
attctaatcaagatttgatttaacgtctacagagcatcgagttgacaaatgaatctcttgatttcttgaagaaaatatttgttgcgtttgatattaattc |
53866931 |
T |
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| Q |
517 |
tgtatgtcagccgctcacacgttctttaatattttcactttttaatgcttctcattagtgat |
578 |
Q |
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| T |
53866932 |
tgtatgtcagccgctcacacgttctttaatattttcactttttaatgcttctcattagtgat |
53866993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 139 - 363
Target Start/End: Complemental strand, 54160741 - 54160519
Alignment:
| Q |
139 |
gaaggtatgaatgaacgtggacttactttcacaggatttcaatctctccatgctgatttcatgaaaattttgtttcgtgagataccatggactatgctta |
238 |
Q |
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| T |
54160741 |
gaaggtgtcaatgaacatggacttactttagcaggatttcaatctttacacgctgatttcaagaaaatatggcaccgggaggtaccgtgggctatgctaa |
54160642 |
T |
|
| Q |
239 |
aaaggtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttcttttgatatgaaatgtggc |
338 |
Q |
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| T |
54160641 |
gaaagtttgggtatatggatgatatcagacttgctgatcatctaattccgcctctgacacgtgctcccgatcag--gtttttttttatacaaattgtggc |
54160544 |
T |
|
| Q |
339 |
cttgtgtatattttgttctttattt |
363 |
Q |
| |
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||||| | |||| |||||| ||||| |
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| T |
54160543 |
cttgtttgtattgtgttctgtattt |
54160519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 54160495 - 54160410
Alignment:
| Q |
416 |
tattctaatcaa-gatttgatttaacgtctacagagcgtcgagttgacaaatgaagctcttgatttcttgaagaaaatatttgttg |
500 |
Q |
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|||||||||||| |||| ||||||| | ||||||| ||||||||||||||||||||| | | |||||||||||| ||||||||| |
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| T |
54160495 |
tattctaatcaaagattggatttaatttgtacagagtgtcgagttgacaaatgaagctttagccttcttgaagaaagtatttgttg |
54160410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 7e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 224 - 336
Target Start/End: Complemental strand, 17882712 - 17882600
Alignment:
| Q |
224 |
catggactatgcttaaaaggtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttctttt |
323 |
Q |
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|||||||| |||| | |||||||||||||||||||||||||| ||||||||| || ||||||| |||||||||||| |||||||||||||||||||| |
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| T |
17882712 |
catggactgtgctcaggaggtttggatataatgatgatatcaagcttgctgatgatttaattccacctttgaaacgtgcacctgatcaggtgtttctttt |
17882613 |
T |
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| Q |
324 |
gatatgaaatgtg |
336 |
Q |
| |
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|| ||||| |||| |
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| T |
17882612 |
gagatgaattgtg |
17882600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 14775320 - 14775222
Alignment:
| Q |
243 |
gtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttcttttgatatgaaatgtggcctt |
341 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| || | ||||| |||||||||||| |||||||||||||||||||| | ||||| |||| |||| |
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| T |
14775320 |
gtttggatataatgatgatatcaagcttgctgataatttgattccacctttgaaacgtgcacctgatcaggtgtttcttttcagatgaattgtgacctt |
14775222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 224 - 338
Target Start/End: Complemental strand, 15017406 - 15017292
Alignment:
| Q |
224 |
catggactatgcttaaaaggtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttctttt |
323 |
Q |
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|||||||| |||| |||| ||||||||||||| ||||| |||| ||||||| | || || ||||| |||||| | ||| |||||||||||||||||||| |
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| T |
15017406 |
catggactgtgctaaaaaagtttggatataattatgatgtcaagcttgctgctgatttatttccgcctttgaagcttgcacctgatcaggtgtttctttt |
15017307 |
T |
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| Q |
324 |
gatatgaaatgtggc |
338 |
Q |
| |
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|| || || |||||| |
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| T |
15017306 |
gagataaattgtggc |
15017292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 338
Target Start/End: Complemental strand, 15050156 - 15050063
Alignment:
| Q |
243 |
gtttggatataatgatgatatcaaacttgctgatcatctaattccggatttgaaacgtgctcctgatcaggtgtttcttttgatatgaaatgtggc |
338 |
Q |
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||||||||||||| |||||||||| ||| ||||| || || |||| |||||||| || ||||||||||| |||||||||| || || |||||| |
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| T |
15050156 |
gtttggatataattatgatatcaagctttctgatgatttatttccacctttgaaac--gcacctgatcaggtctttcttttgagataaattgtggc |
15050063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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