View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_29 (Length: 573)

Name: NF8986_low_29
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_29
NF8986_low_29
[»] chr1 (4 HSPs)
chr1 (95-246)||(6445224-6445375)
chr1 (242-436)||(6444998-6445176)
chr1 (447-503)||(6444919-6444975)
chr1 (25-65)||(6445369-6445409)
[»] chr4 (1 HSPs)
chr4 (248-331)||(16074561-16074644)
[»] chr8 (1 HSPs)
chr8 (243-326)||(8969359-8969442)
[»] chr3 (1 HSPs)
chr3 (243-326)||(27118085-27118168)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 6445375 - 6445224
Alignment:
Q  95 ttttaaataagtaacccttctatatatatttgtattgaatgacagttgaatatgaatggaacaattttctgtcacacaaccaaccgtttattgaaataca 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6445375 ttttaaataagtaacccttctatatatatttgtattgaatgacagttgaatatgaatggaacaattttctgccacacaaccaaccgtttattgaaataca 6445276  T
Q  195 accatacataaaaggagaaaataggaaatgcacgccagtgttagctaatttt 246  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6445275 accatacataaaaggagaaaataggaaatgcacaccagtgttagctaatttt 6445224  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 242 - 436
Target Start/End: Complemental strand, 6445176 - 6444998
Alignment:
Q  242 attttccttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactagacatgct----ccagtgaaaactttacatgacgaa 337  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    ||||||||||||| ||| ||        
T  6445176 attttccttgtaatcaatacagttttaatcattaaaaagaaattaatggattgaatgtgcactagacatgctagctccagtgaaaacttcacagga---- 6445081  T
Q  338 atggtggatatttattggatgaccatgtaaaactattttatactatgttttgcaaccatctcttaaagataaccaccaaatactctatttatattcctt 436  Q
          || ||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6445080 ------gagattt----------catgtaaaactattttatactatgttttgcaaccatctcttaaagataaccaccaaatactctatttatattcctt 6444998  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 503
Target Start/End: Complemental strand, 6444975 - 6444919
Alignment:
Q  447 tactcgatttatattgaacgtcaatgtaaaattagtttaaattggttgtgcatattc 503  Q
    ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||    
T  6444975 tactcgatttatattgaacgtcagtgtaaaattagtttaaattgattttgcatattc 6444919  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 6445409 - 6445369
Alignment:
Q  25 ttcagggtaaataattccatttcctcattaatctttttaaa 65  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  6445409 ttcagggtaattaattcaatttcctcattaatctttttaaa 6445369  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 331
Target Start/End: Original strand, 16074561 - 16074644
Alignment:
Q  248 cttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactagacatgctccagtgaaaactttacat 331  Q
    |||||||||| | ||||| |||||||||||||||||| ||||||||| ||||||||||||| | ||||| ||||||||| ||||    
T  16074561 cttgtaatcagtgcagttctaatcattaaaaagaaatgaatggtgtggatgtgcactagacctcctccaatgaaaacttcacat 16074644  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 8969359 - 8969442
Alignment:
Q  243 ttttccttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactagacatgctccagtgaaaactt 326  Q
    ||||||||||||| | |||| || |||||||||||||||||| || |||||| ||||||||||||| | |||| || |||||||    
T  8969359 ttttccttgtaataagtacaattctaatcattaaaaagaaatgaagggtgtggatgtgcactagacctcctccggtaaaaactt 8969442  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 27118168 - 27118085
Alignment:
Q  243 ttttccttgtaatcaatacagttttaatcattaaaaagaaattaatggtgtgaatgtgcactagacatgctccagtgaaaactt 326  Q
    ||||| ||||||| | | ||||| ||||| |||||||||||| ||||||||| ||||||||||||  | |||||||||||||||    
T  27118168 ttttctttgtaataagttcagttctaatcgttaaaaagaaatgaatggtgtggatgtgcactagatctcctccagtgaaaactt 27118085  T

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