View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8986_low_30 (Length: 566)

Name: NF8986_low_30
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8986_low_30
NF8986_low_30
[»] chr1 (2 HSPs)
chr1 (153-550)||(20222077-20222478)
chr1 (27-160)||(20221878-20222008)
[»] chr8 (1 HSPs)
chr8 (429-510)||(15005994-15006072)
[»] chr7 (2 HSPs)
chr7 (429-510)||(38818859-38818937)
chr7 (429-510)||(17933915-17933993)
[»] scaffold0002 (1 HSPs)
scaffold0002 (429-510)||(187922-188000)
[»] chr3 (1 HSPs)
chr3 (429-510)||(13224489-13224567)
[»] chr2 (1 HSPs)
chr2 (429-510)||(14465001-14465079)


Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 153 - 550
Target Start/End: Original strand, 20222077 - 20222478
Alignment:
Q  153 atttttccaacaatttaacatacaaaatggttttggtccccaatttttgatcacattcacacatcattattgggcaatgatctgatagcgctttgtctaa 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  20222077 atttttccaacaatttaacatacaaaatggttttggtccccaatttt-gatcacattcacacatcattattgggcaatgatcttatagctctttctctaa 20222175  T
Q  253 agacaactgcttgcaatctggtcactctctaatccaagactccgaaataagaaatctgtcaatcctgctcttgatcaagtgtaccttcttccatgaagag 352  Q
    | ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20222176 acacaactgcttgcaatctggtcactct--aatccaagactccgaaataagaaatctgtcaatcctgctcttgatcaagtgtaccttcttccatgaagag 20222273  T
Q  353 gtaaatctatcaagtgtaccttcttcttgtgaatgtactccccaggc-ggatgcttagcgcgttagcaatgtc---------gtcaatacacacagccgc 442  Q
    |||||||||||| ||||||   ||||||| ||||||||||||||||| |||||||||| |||||||||||  |         ||| |||| |||||||||    
T  20222274 gtaaatctatcacgtgtac---cttcttgcgaatgtactccccaggcgggatgcttagtgcgttagcaataacattgcacgggtcgatacgcacagccgc 20222370  T
Q  443 ctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttctctcagggtcgaaccagcagagtgctttcgcc 542  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20222371 ctggtatccattgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttctctcagggtcgaatcagcagagtgctttcgcc 20222470  T
Q  543 attgatgt 550  Q
     |||||||    
T  20222471 tttgatgt 20222478  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 20221878 - 20222008
Alignment:
Q  27 gattgcctatgcttcacctttaatttccaaatctgttcaatccttcctttgcttcttttattctgcttcctatgttttgagtatgacttcggcgccaatc 126  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  20221878 gattgcctatgtttcacctttaatttccaa-tctgttcaatccttcctttgcttcttttattctgcttcctatgttttg--tatgacttcggcgccaatc 20221974  T
Q  127 tttgagcctccctttaatcattttaaatttttcc 160  Q
    ||||||||||||||||||||||||||||||||||    
T  20221975 tttgagcctccctttaatcattttaaatttttcc 20222008  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 510
Target Start/End: Original strand, 15005994 - 15006072
Alignment:
Q  429 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 510  Q
    |||||||||||||||| |||||||||||||  |||||||   |||||| |||||||||||||||||||||||||||||||||    
T  15005994 atacacacagccgcctagtatccatcgtttacggctagg---actactagggtctctaatcccattcgctcccctagctttc 15006072  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 429 - 510
Target Start/End: Original strand, 38818859 - 38818937
Alignment:
Q  429 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 510  Q
    |||| ||||||||||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||    
T  38818859 atacgcacagccgcctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttc 38818937  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 510
Target Start/End: Complemental strand, 17933993 - 17933915
Alignment:
Q  429 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 510  Q
    |||| ||||||||||| |||||||||||||  |||||||   |||||||||||||| |||||||||||||||||||||||||    
T  17933993 atacgcacagccgcctagtatccatcgtttacggctagg---actactggggtctcgaatcccattcgctcccctagctttc 17933915  T

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Target: scaffold0002 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 510
Target Start/End: Original strand, 187922 - 188000
Alignment:
Q  429 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 510  Q
    |||| ||||||| ||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||    
T  187922 atacgcacagccacctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttc 188000  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 429 - 510
Target Start/End: Original strand, 13224489 - 13224567
Alignment:
Q  429 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 510  Q
    |||| ||||||| ||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||    
T  13224489 atacgcacagccacctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttc 13224567  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 429 - 510
Target Start/End: Original strand, 14465001 - 14465079
Alignment:
Q  429 atacacacagccgcctggtatccatcgtttggggctaggtgtactactggggtctctaatcccattcgctcccctagctttc 510  Q
    |||| |||| || ||| |||||||||||||  |||||||   ||||||||||||||||||||||||||||||||||||||||    
T  14465001 atacgcacaaccacctagtatccatcgtttacggctagg---actactggggtctctaatcccattcgctcccctagctttc 14465079  T

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