View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_32 (Length: 560)
Name: NF8986_low_32
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 126 - 541
Target Start/End: Original strand, 50968532 - 50968942
Alignment:
| Q |
126 |
ttgtgagacaattgtattttaaaacaaacaactaaagcaaactgaattgttacaacttacaccctggttgtctaacatgtcccttcatcccaaaattaaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50968532 |
ttgtgagacaattgtattttaaaacaaacaactaaagcaaactgaattgttacaacttacaccctggtcgtctaacatgtcccttcatcccaaaattaaa |
50968631 |
T |
|
| Q |
226 |
acatcaatcacaccctgctctacaattggatcgcttgtatatagttgaattaacaaagcttgtccaaaaatataaatatccaaagcaatagagaaaccta |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50968632 |
acatcaatcacaccctgctctacaattggatcgcttgtatatagttgaattaacaaagcttgtccaaaaatataaatatccaaagcaatagagaaaccta |
50968731 |
T |
|
| Q |
326 |
tatacttacaatgaaattgacatgcccactgccctttgagtcatgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
425 |
Q |
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| T |
50968732 |
tatacgtacaatgaaattgacatgcccactgccctttgagtcatgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
50968831 |
T |
|
| Q |
426 |
ttgtaatcgacggaataaaacatatgatatatgacgcaaccatcctcgacgctgcatcgagttgtttcctgaaagtggagattacaaatgagatttagca |
525 |
Q |
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| T |
50968832 |
ttgtaatcaacggaataaaac-----atatatgacacaaccatcctcgacgctgcattgagttgtgtcctgaaagtggagattacaaatgagatttagca |
50968926 |
T |
|
| Q |
526 |
tggatcaggcgtaaac |
541 |
Q |
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| T |
50968927 |
tggatcaggcgtaaac |
50968942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 367 - 425
Target Start/End: Original strand, 50970885 - 50970943
Alignment:
| Q |
367 |
catgagttgttgattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
425 |
Q |
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| T |
50970885 |
catgagttgttaattaatcaaggaaattacactcgatgaaataataaggaaaatataac |
50970943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 50968420 - 50968463
Alignment:
| Q |
14 |
gatggacatggatgtatgaaatatttgagtacagttagctatac |
57 |
Q |
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| T |
50968420 |
gatgaacatggatgtatgaaatatttgagtacagttagctatac |
50968463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 11625914 - 11625880
Alignment:
| Q |
379 |
attaatcaaggaaattacactcgatgaaataataa |
413 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
11625914 |
attaatcaaggaaattacactcgatgaaataataa |
11625880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 379 - 413
Target Start/End: Original strand, 21185281 - 21185315
Alignment:
| Q |
379 |
attaatcaaggaaattacactcgatgaaataataa |
413 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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|
| T |
21185281 |
attaatcaaggaaatcacactcgatgaaataataa |
21185315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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