View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8986_low_35 (Length: 551)
Name: NF8986_low_35
Description: NF8986
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8986_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 147 - 535
Target Start/End: Original strand, 46997483 - 46997871
Alignment:
| Q |
147 |
agttgtgcattgattatatatttggttgaagattatcatttttgtgtcaagcctgacctgtatttattgaattctttacttgatnnnnnnnnnnnnntta |
246 |
Q |
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| T |
46997483 |
agttatgcattgattatatatttcgtagaagattatcatttttgtgtcaagcctgacctgtatttattgaattatttacttgataaaaaaaataat-tta |
46997581 |
T |
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| Q |
247 |
aaatgccaaatatctatttttaaatcatgcaatttgagc------agtgaaccgggggttgaggttgagtttgagttaattagatttgtatcaaatttgg |
340 |
Q |
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| T |
46997582 |
aaatgccaaatatctatttttaaatcatgcaatttgagctaatgaagtgaaccggggg-----gttgagtttgagttaattagatttgtatcaaatttgg |
46997676 |
T |
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| Q |
341 |
attgaattttaagttaagctacaaattcagttcggatcgacttctttttagccctattagaaactgaaccaatctatggtatgaatatccttttgtttac |
440 |
Q |
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| T |
46997677 |
attaaattttaagttaagctacaaattcagttcggatcgacttatttttagccctattaaaaactgaaccaatctataatatgaatcgtcttttgtttac |
46997776 |
T |
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| Q |
441 |
ccattcccgtagagtagatgtaggagtaagaagaaacgtgtaccaactcaagccctctcaattctggaagaagaagaggtaacaaacatagcaca |
535 |
Q |
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| T |
46997777 |
ccattcccgtagagtagatgtaggagtaagaagaaacgtgtaccaactcaagccctctcacttctagaagaataagaggtaacaaacatagcaca |
46997871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 46997398 - 46997483
Alignment:
| Q |
27 |
ttcttttgcctatcattttaaaatcaaaatcccatgcaaaacaaaccatcagtttcaagttttcattatgttgctagtgagggcaa |
112 |
Q |
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| T |
46997398 |
ttcttttgcctatcattttaaaatcaaaatcccatgcaaaacaaaccatcagtttcaagttttcattatgttgctagtgagggcaa |
46997483 |
T |
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